Cluster no. 221

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Cluster is part of supercluster: 163

Cluster characteristics:

size 114
size_real 114
ecount 424
supercluster 163
annotations_summary 3.51% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
pair_completeness 0.425
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0087719298245614
satellite_probability 1.0041894271145e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 43
S1 26
S3 45
comparative analysis - number of edges between species:
S2 S1 S3
S2 69.0 38 61.5
S1 38.0 25 35.0
S3 61.5 35 61.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.030 0.976 0.983
S1 0.976 1.100 0.961
S3 0.983 0.961 1.040

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatV Ty3-GAG TatV Ty3-GAG 4 0.035

clusters connected through mates:

Cluster Number of shared
read pairs		 k
8 16 0.0269
758 7 0.233
1370 5 0.185
6160 2 0.08
4 1 0.000438
63 1 0.00404
75 1 0.00224
2750 1 0.0377
11300 1 0.0408
18700 1 0.0417
41400 1 0.0417

CL221 ----> CL8

image

No. of shared pairs: :16