Cluster no. 139

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Cluster is part of supercluster: 82

Cluster characteristics:

size 346
size_real 346
ecount 3207
supercluster 82
annotations_summary
pair_completeness 0.214035087719298
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00289017341040462
satellite_probability 1.5718759856987e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 110
S1 117
S3 119
comparative analysis - number of edges between species:
S2 S1 S3
S2 320 339 352
S1 339 384 386
S3 352 386 403
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.020 0.986 0.995
S1 0.986 1.020 0.994
S3 0.995 0.994 1.010

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
12 39
23 5

clusters connected through mates:

Cluster Number of shared
read pairs		 k
23 76 0.0845
12 46 0.0254
1130 2 0.0169
9840 2 0.0176
12800 2 0.0176
4 1 0.000422
5 1 0.000442
11 1 0.000743
16 1 0.000566
18 1 0.000507
33 1 0.00102
44 1 0.00107
56 1 0.000939
59 1 0.0019
73 1 0.00185
75 1 0.00187
80 1 0.00117
92 1 0.00242
97 1 0.00191
152 1 0.00633
409 1 0.00794
1760 1 0.00855
3740 1 0.00873
6410 1 0.00877
13500 1 0.00881
27400 1 0.00885
30800 1 0.00885

CL139 ----> CL23

image

No. of shared pairs: :76

CL139 ----> CL12

image

No. of shared pairs: :46