Cluster no. 181

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Cluster is part of supercluster: 123

Cluster characteristics:

size 183
size_real 183
ecount 786
supercluster 123
annotations_summary 97.81% organelle/plastid
pair_completeness 0.86734693877551
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00546448087431694
satellite_probability 1.29626994154157e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 42
S1 70
S3 71
comparative analysis - number of edges between species:
S2 S1 S3
S2 44.0 63.5 77
S1 63.5 117.0 112
S3 77.0 112.0 121
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.020 0.926 1.060
S1 0.926 1.080 0.970
S3 1.060 0.970 0.993

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 179 0.98

clusters connected through mates:

Cluster Number of shared
read pairs		 k
217 6 0.429
308 3 0.25
94 1 0.0222
112 1 0.0286