Cluster no. 124

Cluster no. 124

Go back to cluster table

Cluster is part of supercluster: 67

Cluster characteristics:

size	514
size_real	514
ecount	1497
supercluster	67
annotations_summary
pair_completeness	0.314578005115089
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00194552529182879
satellite_probability	1.14260235015906e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	183
S1	140
S3	191

comparative analysis - number of edges between species:

	S2	S1	S3
S2	209	148	201
S1	148	96	150
S3	201	150	193

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.00	1.010	0.990
S1	1.01	0.923	1.050
S3	0.99	1.050	0.975

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

3	15
14	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

3	37	0.022
14	37	0.0199
6	3	0.00192
24	3	0.00242
80	2	0.00228
151	2	0.0103
7250	2	0.0147
18900	2	0.0148
39	1	0.000847
68	1	0.00132
70	1	0.00225
79	1	0.00197
148	1	0.00458
325	1	0.00631
3840	1	0.00733
6660	1	0.00735
8370	1	0.00738
9350	1	0.00738
10300	1	0.00738
10400	1	0.00738
14100	1	0.00743
17600	1	0.00741
38400	1	0.00741
42900	1	0.00741
43400	1	0.00741

CL124 ----> CL3

No. of shared pairs: :37

CL124 ----> CL14

No. of shared pairs: :37