Cluster no. 172

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Cluster is part of supercluster: 114

Cluster characteristics:

size 198
size_real 198
ecount 388
supercluster 114
annotations_summary
pair_completeness 0.294117647058823
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00505050505050505
satellite_probability 1.1552035631474e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 51
S1 79
S3 68
comparative analysis - number of edges between species:
S2 S1 S3
S2 33.0 44.5 29.5
S1 44.5 74.0 42.5
S3 29.5 42.5 48.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.120 1.000 0.891
S1 1.000 1.110 0.854
S3 0.891 0.854 1.290

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
202 16 0.16
320 10 0.127
1700 3 0.0508
4200 3 0.0531
3380 2 0.0351
26800 2 0.0364
1 1 0.000487
67 1 0.00234
73 1 0.00207
81 1 0.00578
1510 1 0.0168
11600 1 0.018
21000 1 0.0182
29300 1 0.0182
40300 1 0.0182
44100 1 0.0182
44800 1 0.0182
48200 1 0.0182
52200 1 0.0182

CL172 ----> CL202

image

No. of shared pairs: :16

CL172 ----> CL320

image

No. of shared pairs: :10