Cluster no. 220

Go back to cluster table

Cluster is part of supercluster: 162

Cluster characteristics:

size 114
size_real 114
ecount 287
supercluster 162
annotations_summary 57.89% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
8.77% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.88% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness 0.425
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0087719298245614
satellite_probability 1.0041894271145e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 36
S1 41
S3 37
comparative analysis - number of edges between species:
S2 S1 S3
S2 18.0 33.5 22.5
S1 33.5 42.0 40.5
S3 22.5 40.5 34.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.943 1.120 0.90
S1 1.120 0.896 1.03
S3 0.900 1.030 1.04

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-INT Athila Ty3-INT 1 0.0088
TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 10 0.0877
TatV Ty3-INT TatV Ty3-INT 66 0.5789

clusters connected through mates:

Cluster Number of shared
read pairs		 k
249 8 0.195
279 5 0.114
6500 2 0.08
7430 2 0.08
58 1 0.00283
34800 1 0.0417