Cluster no. 145

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Cluster is part of supercluster: 88

Cluster characteristics:

size 305
size_real 305
ecount 798
supercluster 88
annotations_summary
pair_completeness 0.25
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00327868852459016
satellite_probability 1.43823371129479e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 92
S1 107
S3 106
comparative analysis - number of edges between species:
S2 S1 S3
S2 65 91 80
S1 91 118 98
S3 80 98 77
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.931 1.000 1.060
S1 1.000 0.999 0.999
S3 1.060 0.999 0.945

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
73 1
86 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
86 24 0.0839
73 23 0.0442
381 10 0.0913
5990 4 0.0428
3400 3 0.0317
319 2 0.0186
668 2 0.02
708 2 0.0204
719 2 0.0204
1860 2 0.0211
1970 2 0.0211
2740 2 0.0213
3920 2 0.0213
4290 2 0.0213
6070 2 0.0216
7610 2 0.0214
12600 2 0.0215
20400 2 0.0216
34700 2 0.0216
580 1 0.0101
722 1 0.0102
1160 1 0.0103
1540 1 0.0104
1820 1 0.0106
1820 1 0.0104
2090 1 0.0106
2130 1 0.0106
2300 1 0.0106
2300 1 0.0106
2560 1 0.0105
3150 1 0.0106
3280 1 0.0107
3650 1 0.0107
4690 1 0.0106
5800 1 0.0107
6130 1 0.0108
6300 1 0.0108
6450 1 0.0107
6450 1 0.0107
6500 1 0.0107
6590 1 0.0108
7110 1 0.0107
8510 1 0.0108
8830 1 0.0108
9280 1 0.0108
9480 1 0.0108
9660 1 0.0108
10100 1 0.0108
10500 1 0.0108
11000 1 0.0108
12000 1 0.0109
13200 1 0.0108
13800 1 0.0108
15600 1 0.0108
18900 1 0.0108
29000 1 0.0108
30000 1 0.0108
30200 1 0.0108
30800 1 0.0108
32000 1 0.0108
32400 1 0.0108
37300 1 0.0108
37700 1 0.0108
38100 1 0.0108
39400 1 0.0108
40300 1 0.0108
41800 1 0.0108
45700 1 0.0108
48700 1 0.0108
51100 1 0.0108

CL145 ----> CL86

image

No. of shared pairs: :24

CL145 ----> CL73

image

No. of shared pairs: :23

CL145 ----> CL381

image

No. of shared pairs: :10