Cluster no. 104

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Cluster is part of supercluster: 49

Cluster characteristics:

size 941
size_real 941
ecount 3899
supercluster 49
annotations_summary
pair_completeness 0.704710144927536
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00106269925611052
satellite_probability 1.64859681984477e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 311
S1 319
S3 311
comparative analysis - number of edges between species:
S2 S1 S3
S2 416 460 400
S1 460 501 434
S3 400 434 393
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.996 1.010 0.997
S1 1.010 1.000 0.989
S3 0.997 0.989 1.020

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
85 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
85 9 0.0331
456 9 0.0947
2450 6 0.0706
2780 6 0.0706
591 5 0.0552
1700 5 0.0585
1640 4 0.0468
4940 4 0.0476
4470 3 0.0357
4810 3 0.0357
14000 3 0.0361
554 2 0.0222
1280 2 0.0234
2320 2 0.0234
2560 2 0.0238
3430 2 0.024
3700 2 0.024
3900 2 0.0238
11900 2 0.0241
12700 2 0.0241
27700 2 0.0242
75 1 0.00198
511 1 0.0113
1460 1 0.0115
1480 1 0.0118
1750 1 0.0117
4030 1 0.0119
5130 1 0.012
6760 1 0.0121
7540 1 0.012
13100 1 0.012
14300 1 0.012
16900 1 0.0121
21100 1 0.0121
23700 1 0.0121
34400 1 0.0121
41300 1 0.0121
42400 1 0.0121
44700 1 0.0121
49800 1 0.0121
50000 1 0.0121