Cluster no. 111

Go back to cluster table

Cluster is part of supercluster: 46

Cluster characteristics:

size 833
size_real 833
ecount 4403
supercluster 46
annotations_summary 10.08% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
pair_completeness 0.580645161290323
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00120048019207683
satellite_probability 1.00051650786948e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 294
S1 282
S3 257
comparative analysis - number of edges between species:
S2 S1 S3
S2 484 523 446
S1 523 612 478
S3 446 478 412
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.010 0.982 1.010
S1 0.982 1.040 0.977
S3 1.010 0.977 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-GAG SIRE Ty1-GAG 84 0.1008
Athila Ty3-RH Athila Ty3-RH 1 0.0012

clusters with similarity:

Cluster Number of similarity hits
51 3
99 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
51 30 0.0674
166 23 0.13
1780 6 0.0524
1320 3 0.026
12800 3 0.0268
8 2 0.00293
2360 2 0.0179
3010 2 0.0176
6230 2 0.0178
9970 2 0.0179
10400 2 0.0179
12300 2 0.0179
21600 2 0.0179
46900 2 0.0179
2 1 0.000435
5 1 0.000442
16 1 0.000566
24 1 0.000823
42 1 0.000888
48 1 0.0016
80 1 0.00117
225 1 0.00766
247 1 0.00704
254 1 0.00685
279 1 0.0076
1780 1 0.00866
2080 1 0.00881
2400 1 0.00873
3930 1 0.00885
12600 1 0.00901
16200 1 0.00897
27500 1 0.00897
36000 1 0.00897
38400 1 0.00897
40500 1 0.00897
48200 1 0.00897

CL111 ----> CL51

image

No. of shared pairs: :30

CL111 ----> CL166

image

No. of shared pairs: :23