Tandem Repeat Analyzer

Run statistics:

Number of input sequences: 1800000

Number of analyzed sequences: 757697

Cluster merging: No

Consensus files - fasta format:

Putative satellite (high confidence) - total 1 found

Putative satellite (low confidence) - total 3 found

rDNA - total 2 found

Documentation

For the explanation of TAREAN output see the help section

Putative satellite (high confidence)

  Cluster Genome
Proportion
[%] 		Genome
Proportion
Adjusted[%] 		Size
real 		Satellite
probability 		Consensus
length 		Consensus Graph
layout 		Kmer
analysis 		Connected
component
index C 		Pair
completeness
index
P 		Kmer
coverage 		|V| |E| Pbs
score 		Similarity
based
annotation
120 120 0.027 0.027 202 0.751 377 
ATAAGATCAAGAAAGTTTCAAAATATAAGTGAAACTTTGATGTTTGCATCGAATAAGTAGGTTTCTTGGTGCTCAAGTAA
TCAGGTAAAACACTGCCGCATGTTTGAAACTCTACCATTTCAAATACATATAACACTCATCATTAAATAATAGTGCTTTT
AAAAACACGTTTCGACTTTGGGAGTAGAATTTGCGTGAATAAGACGAAAAAGTTTTCAAATATTAGTAGAATATTCATAT
TTTCATATTGACCGAGCAGGTTGCTTAGTGACTAAGTAATCAGGTAAAACACTGCCGCATGTTTGCCATTCTACATTTTA
AAGCATCTATAACACTCATCATTTGCATATTACCGTTTGGACCCTGGATCCGCGCCA

seqclust/clustering/clusters/dir_CL0120/CL120_tmb.png

report

0.95

0.87

0.435

202

5020

0




 
	


 

 


 
 Putative satellite (low confidence)










	

	 
	
 
		   
		Cluster  
		Genome
Proportion
[%]  		
		Genome
Proportion
Adjusted[%]  		
		Size
real  		
		Satellite
probability  		
		Consensus
length  		
		Consensus  
		Graph
layout  		
		Kmer
analysis  		
		Connected
component
index C  		
		Pair
completeness
index
P  		
		Kmer
coverage  		
		|V|  
		|E|  
		Pbs
score  		
		Similarity
based
annotation		 
	
 

 
58

58

0.300

0.300

2294

0.0687

189


TCAAAACAACCCTTCTTTTTAATCCTACCCCTAATTCTCTAAATAGCCCTTACTTCCAACAATTACCCCTATTTTTTAAC
TACTGTGAAGGGTTGGTTTTTGCAGCACCCAATCCAAATGATTCATCATCTTTCATATTTGTCGATCTACCCCTACTATG
CTTAAACTACCCCTACTTCTCTTAATACT

seqclust/clustering/clusters/dir_CL0058/CL58_tmb.png

report

0.864

0.849

0.693

2294

133000

0

0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT



 

 
143

143

0.017

0.017

 129

0.5790

 74


ACATTTAATTGTCATTTATTTAGGAATAATGTGTGTCACATTTAATTGTCATTTATTTAGGAATAATGTGTGTC

seqclust/clustering/clusters/dir_CL0143/CL143_tmb.png

report

0.930

0.870

0.574

 129

  4040

0




 

 
157

157

0.014

0.014

 105

0.0177

604


GCCCGAACGGTTCCGGATCGCAACCGACCGAACTAGAAAAACGATCGACTCCCCACCGTGGGTTGGGTGGGCGGGGCGGG
TGGTGTGTTCAAGGCACGAGAATTAATTCGAACTGAGGAGGGGTTTTTGGAGCTAGGTCATGGAAATGATCGATTCAAAG
GGCAGAACTGGTCGGCGATTTCCCAGGCTCTGTAGAAAGTCACCACGGTGGCTTTAGAGAGCGCTCCGAACCCTCGATCT
CGGCTTTCGAACTGGCGAACGCAAGTATAGGAATTTCCAGACCAACGCACGCTTCGAAGGCCCGGGCGGTTTGGCGTCTA
CCCATATTACAGAGAAATTTACTATGGAGGTTTCCTAGCCGCTCCAAACCATAGATCTCAGCTTCCGAATTTGCGAAGCC
AAGCGTAGGGATTTCTCGATCGACGTGCGTTTCGGAGGCCCGACGGTTCCGTACCGCGGTCGGGCCAACGAGAATAATGA
TCGGCTGCCGAAACTCGACATTAATTTGCTATGGTAGGTTCCGGGGCGCTCCGTACCCTCGATATCGGCTTTCGAGCTGG
CGAATGCGAGTTTAGAAATTTCTGTAACAACGCGCGTTTCGGAG

seqclust/clustering/clusters/dir_CL0157/CL157_tmb.png

report

0.714

0.875

0.640

 105

   464

0




 
	


 

 


 
 Putative LTR element



not found


 
 rDNA










	

	 
	
 
		   
		Cluster  
		Genome
Proportion
[%]  		
		Genome
Proportion
Adjusted[%]  		
		Size
real  		
		Satellite
probability  		
		Consensus
length  		
		Consensus  
		Graph
layout  		
		Kmer
analysis  		
		Connected
component
index C  		
		Pair
completeness
index
P  		
		Kmer
coverage  		
		|V|  
		|E|  
		Pbs
score  		
		Similarity
based
annotation		 
	
 

 
57

57

0.310

0.310

2342

0.994

8190


GTTGCGATCTCGGAAAAGTTTGGTTTTGGTTGGATTTCACCAGTTTTTCCGAAAACTGGCCAAATCTAGCTAGAACCATG
CTGAAATGTGGGCGATTACAGGAAAGTTTGATTTTCGCTAAATTTCACCGATATTTTCGAAAATTGGGCGGATCAGGCAG
AAACACTGGTGAAACGTGGCCGCTCATGGGAAAGTTCGGTTCTGGCGAGATTTCCCAGTTTTATTGAAAACTGGACGTAT
TAAGCAGAAACCATGCTGAAACATGGGCGATCACGGGAAAGTTTTGTGTTTGCAAGATTTAACCGATTTTTTGAAAATTG
GATGGATCAGGCGGAAATCAAGCTGTGCACCGATCGGAACAAAATTTGTTGCGTGGATTTTTCGACAAATTGGTACACCT
CGGTTTTTTGTCGGTTTGTTAACGATTCGAAAGGATCGTGTGAGAACCAAGTTGAACGTGGATCGATCAAGGAAAATGGG
TTGCTTGGTTTTTCGGATGAGAAAGGTTTTTCGTGCTTAGCGGATCATCCTGTTTATTTTTCTTGGACCTTTTCTACTAG
TTGATTTATTTCAACTTAGTGGGGATGGCTGAGAATTTGAATGGGTTGTGGTCGCAAGGCATGTGAGTGGTTATCGGTGT
ATTTACTCGTTGGGCTCCCTGCTTTGTTGCAGCCAACCAACGAAAAAGCACCATTATCGTACTTTTTGTTTGAAACATAA
CGTGCGAGCCCCTTTTGCCTTCTAATGATATCGAAATGGAATTTGTTGGTTTTACCTATGTTGTTGTTCTTCACCATGCC
ATGTGGCGATGGGGAGGATGACCAATGAGGCCACCTTCTACGATGATAATCAGCGATGTTGGAAAGCGCTTAAGATTATT
GGTTGTTGAGTGGTTTCAAAGTTTTATGGATGTGGTGCATCGATTTGGCTTTCAAGGACAGGTGCCTTGTTTGCATTAAA
TGTATTTCGATTTTGTCCGCTCTTTGTGAAAAGACATCGTACAATTGTGTCGTCATCTCTTATATTAAGAGTATGCTCGT
CATGTTGTCGGTGACTTAAAGGACTTTCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCAT
GCATGTGTAAGTATTAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTACG
TGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAAGCCCGACTTTTGGAAGGGACGCATTTATTAGA
TAAAAGGCTGACACGAGCTTTGCTCGATGCTTTGATGATTTCATTATAACTTGACCGATCGCATGGCCTTTGTGCCAGCG
ACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGAGGCCTACCATGGTAATGACGGGTGACGGAGAA
TTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAAT
CCTGACACGGGGAGGTAGTGACAATAAATAACAATATCGGGCTCTTAGAGTTTGGTAATTGGAATGAGTACAATCTAAAT
CCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGT
TGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGTTTGGTCGTCAGGTCCGCCTTTGACGAGCACCTGGCGTCCTGTCC
CTTTTGCCGATGTTACGAATCTGGCCTTAATTGGTTGGGTCGTGCCTTCGGCGCCGTTACTTTGAAGAAATTAGAGTGCT
CAAAGCAAGCCTACGCTTTGTATACGTTAGCATGGGATAACATTACAGGATTTCGATCCTATTGTGTTGGCCTTCGGGAT
CGGAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACG
AACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCG
TCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAACGGATGTTGCTTTTAGGACTCCGTTGGCACCTTTTGAGAAA
TCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGT
GGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCGGACATAGTAAGGATTGACAGACTGAGAGCTC
TTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACG
AGACCTCGGCCTGCTAACTAGCTACACGGAGTCATCCCTTCGTGGTCAGCTTCTTAGAGGGACTATGGCCGTTTAGGCCA
TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAGCG
AGTCTATATCCTTTGTCGACAGACACGGGTAATCTTCGAAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGT
CTTCAACGAGGAATTCCTAGTAAACGCGAGTCATCAGCTCGCATTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC
GCTCCTACCGATTGAATGGTCCGGTGAAGTGTTTGGATGGTGGCGATAGAGGTGGTTCGCCGCCTGTGGCGTCGCGAGAA
GTCCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTC
GAGTTCCTTTTCGAACAGTTGTGAAATTGTGCTCATACCCGACGAGTACTACGTGTTTGTGCTATTAGTGCATGCGTTGT
CTTGGCGGGTTCCCTTTTGCTGCCTTCGTGTTGCTTTATTTGAAGTGAAACGAAGAGCAGAAATAAGACACCGGCACAGT
TTGTGCCAAGGACAGTTATTGTTGGAGTGCATTGCCATCGTTTTGATGTGCTTTGTGCTATTCTAGCGAGCATCTGAATG
ACTCCTGGCAATGGATATCTTGGCTCTCGTGTCGATGAAGAACGTAGCGAAATGCGACACTTGGTGTGAATTGCAGAATC
CCGTGAACCATCGAGTCTTTGAATGCAAGTTGCGCACGAGGCCATTAGGTCGAGTGCACGTCTGTTTGGGCGTCATGTAT
AGCGTCATTCCAATCTCCCTCATGCGACGAGTGCATTTTGGGTTATGATGGATATGGAGAATGACCTTCCGTGCTTTAAT
TGTATGGTAGGTTTAAGTGATTGTCGTTGCCAGTTATATGCGAGGCGAATGGTGTGTCGAGTTAACGCACGATGTCTCTA
ATCGCGTCCATGAGACCTAGGCATGACTTAGCACTAGCTAAAACCGATTTCGATGTTTGCTTTCGTAGCAGGCTCGGACC
ATGACCTCAGATCAGACGGGGCGACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACGAAGATTCCC
TTAGTAACGGCGAGCGAATCGGGAAAAGCCCAGCTTGAAAATTAGGTGGCTTTGTCGCCTAAATTGTAGTCTGGAGAAGC
GTCATCAGCGACGGATCAGGCCTAGGTCCCTTGGAAAGGGGTGCCAGGGAGGGTGACAGCCCCGTCCGGCTTGAACCTTG
CTGCAACATGAGGCGCTGTCGATGAGTCGGGTTGTTTGGGAATGCAGCCCCAATTGGGTGGTAAATTTCGTCCAAGGCTA
AATAGCGGCGAGAGACCGATAGCTAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGC
TTGAAATTGTCAGGAGGGAAACGAATGGGGGTCGGCGATGCGTGCTGGTTTGATGTTGAACTACTCACATTTAGGGTAGC
TCAACCGCTTGGCTCGGCACGTGGATCGTTGCGGGCTGTGCTTGCGGGCCAAGCCTCGAGTGTTTGATTTGCTTGAGGTA
ACGTCGTCGGCGCAGTCGAGGATGCAGTGCACGCCTCAATGGCGCGTCCTTTGTGGCGCTCTTGTGCGCTCATAGCACCG
TCTAGCGGGCTCCCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCATGCAAATCGATGGGGTGTGAAA
ACTCGGAAGGTGCAAGGAAGCTGATGGGTGGGATCTCCTTTACGGAGTGCACCGCCGACCGATCTTGATCTTTTGTGAAG
GGTTCGAGTGGGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCTTGAGCGGGGCGAAGCCAGAGGAAACTCTG
GTGGAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTA
GTAGCTGGTTCCCTCCGAAGTTTCCCTTAGGATAGCTGGAGCTCGCGTGCGAGTTATATCAGGTAAAGCAAATGATTAGA
GGCATCAGGGGCGTAACACCCTTGACCTATTCTCAAACTTTAAATAGGTAGGACGGTGCGACTGCTTTGGTGAGCCGTGC
CATGGAATCGAGAGCTCTAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTAAGG
TGCCCAACTGCACGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAA
ATTCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGTGCTACCCAC
ACTCGGCCATCGAGGCGGTTGCCATGCCTTGATGAGTAGGAGGGCGCGGTGGCTGCTGCAAAATCTAAGGCGTGAGCCTG
GGTGGAGCGGCCATTGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGGGAACTTTGAAGGCCGAAGAGGGGAAAG
GTTCCATGTGAACGGCACTTGCACATGGGTCAGCCGATCCTAAGGGACGGGGGAAACCCGTAAAAGAGCGCATTGATGCG
CGAGCTCCGAAAGGGAATCGGGTCAAAATTCCCGAGCCAGGACGTGGTGGTAGACGGCAACGTTAGGAAGTCTGGAGACG
CTGGCGGGGGCCTTGGGGAGAGTTATCTTTTCTGCTTAACAGCCTGCCCACCCTGGAAACGGCTCAGCCGGCGGTAGGGT
CAAGCGGTTGGAAGAGCACTGCACGTCGAGCGGTGTCCATTGCGCCCCCGGCGGTCCATGAAAATCCAGAGGACCGAGTG
CCTCCCACGCTTGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAAGAATGTAGGCAA
GGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGTTGGGCTTGGGGGTCCTAACGCGAACC
CATTGGCTGTTGGCGGACTGCTAAAGCCGCTTTCGTGGCGATAGCGGGACGACGCGTGCCGGTTGGGAGACGGGTTAGGA
ATGGGACTTCCTTACGGGAGTTTCTAGCCACTTGCATCGAACAACCGACTCAGAACTGGTACGGACAAGGGGAATCCGAC
TGTTTAATTAAAACAAAGCATTGCGATGGTCCTTGCGGATGCTTACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCA
AAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATC
TAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAA
CGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGT
GTAGGATAAGTGGGAGTCGGTTTACCGGCGAAAGTGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGATACG
AAGGTGGGGCTCAGCCCCTCCTTTTGGTTCTAAGGTCCTTTTCAAGGATCGATTCGGGCGGAAGACAATGTCAGGTGGGG
AGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGT
AGAACAAAAGGGCAAAAGCTCGTTTGATTTTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTTTCGATCCTTT
AGAACTTCGAAATTTGAAGTTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAG
CGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACC
CACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATTGCGTTGCGATAG
TAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACATTTGGTCATCGCGCTTGGTCGAAAAACCAGTGGCGCGAAGC
TACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAGGCTAGAGAAGCGGCGCTTAATCTCAATGACCTTG
TCCCGACCCACAGTAGGTGTGCGAAAGCATACCCATGGGCACATGCCGAAGGACTCGGCCCGCTCGACGTATTCGTCGTA
GGGTCTTCCTTAGATTGAAATTCCGTAAGGTCCATTGATTGAATCCTTTGCAGACGACTTAAATACACGATGGGGCATTG
TAAGTGGTAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCTTAGTCGCATAGATTACCCCCTCCCTCCCAACC
CACCATAAGGTGAGAAAAAAACACGAGGTTGAACACTTGAGGGTTGCCGTTTATTTAGTAAAAAGGGGCCGCTATCACCT
CGTGAAACGCGGGTTCGACCGCAAGTCCCATCATACTCTGGTACTTAAGATTAAATTATAGGCTGCCGAACTTGCGCTCC
GAAGGCGATGATGGAAATAACTGCGTCTATGATGTAAATAAAATACAACCAAGGATTTGTGTACCAGCATACCTCGGCCC
GAGCACACAAGATTCACGCTGGAACTTGGAACGTGAGACGTAATGAAATTTCCACTATAGCCGAGGTGCTTCGCACTAAG
GCGGCCACTTCGACGAAGGTTCGAAAAGTTCCCATACTCAGTTTGGGGAAGTTAGAAAGAAGAACGGCTTTTCAGTAGGT
GGAACGTGATCCGTTCAAAGACCGCAAGTTTTGTCGGAATCTTTTCGGTTGAACATGATCCGCGTCTAAACACTAAGTGC
CAAATTCCTTGGTGAGTAGCCACAGACAGAAAAATGGGACAATGAGTAATCCAATAGGTACATCGATCGACCGACCACCG
AAATATAATTCCGTGGACTTATAAGAAAAGCCCATTGTGCCTGGATTTTATATTGGAAGAGCGGACCAGGCGAAAAGCAA
GCTGTAACGTGCGCTGACACTGAAATCTAAGCCTATGGAATTTCAAACATTTACCCGTGAAATTTACGAAACCTCCGCGC
CGAAGGCTCAAACGCGATCGGTTGACCAGCTTTCTGGTAAAGAAGGTGTTCGAGTTAATGGTGTTCACGTGTGCGCATCG
GGCTTGGCACGCCTTGGATTTGGCAAAGTACCAGATTTGGCACTTGGCAAAGTGCCAGATTCGGAAAACACATGCGGATC
ACTCAAAAACCCAGTGACTACATGGTAAAACCACAAAAAAAAATGTGGTCGGATTTACCTACGTAGCAGAGACACTTTGG
ACTACCGGGGTCATATTAGGCTAAATTCCATATATTCCTATATTGGGGGGGGAGGGTGAGGAGGAGGAGGAAGGGGAAGG
ATTGACCAAAATGGATCAGGCAAAACGCAAGCTGAAACATTGGTCGATCAACAAATTTTTTTTGTGTGGATTTTTCGGAG
AAATTTTTTTTTTTTTTTAAATATTTAAAAAAAAAAAATTTAAAAAAAAAATTTTTTGAAAATGTTTTCGATGGAAGTGC
CCTCCCCAAATTTTTTAAAAATATTTTT

seqclust/clustering/clusters/dir_CL0057/CL57_tmb.png

report

0.991

0.970

0.778

2342

49200

12.3

31.21% 45S_rDNA/25S_rDNA
19.00% 45S_rDNA/18S_rDNA
2.69% 45S_rDNA/5.8S_rDNA
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
100

100

0.057

0.057

 432

0.741

 557


GAAATAAGGGAGAAAGCTAAATTTGCAATTAAAAAGAATCAAGAACGAAATGAAGTATTTGAATCCACAAATTCAAACAA
CGACGGTGAGAATGGCATACGGAAAGAATTGAAGGAAAGAAACTACTGTCAGCTTTTGAAATTCAACCAGACAACGTAGT
GAGAACGTTAAATTTGAAAATAAAAGGAAATGAAATTGTAAAGAAAATAAAAAAAGTGTTCAAGTTCTAATAAAGAAGTA
GAAATAAATAAAAAATGTTGAAATTTTAAACTGTAAGTTCGAACTGCGGCGGTGGTTGACAAAAAGGGAGGGGGTGCAAC
ACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTTCGGAGTTCTGATGGGATCC
GGTGCTTTAGTGCTGGTATGATCGCACCCGTCAGGAAGTGGATTGGCCAAGCACTAATGCAGTGGCTGTAGAGCGTAGAT
AAATGCCGCGGTTAACGGCAACAACGTTTGAAATTCTTAGAAATAACATTACATTTGACAAAATAAAAATAAAAATA

seqclust/clustering/clusters/dir_CL0100/CL100_tmb.png

report

0.954

0.895

0.406

 432

 6890

 0.0

30.09% 5S_rDNA/5S_rDNA
0.23% Class_I/LINE:LINE-RT



 
	


 

 


 
 Other










	

	 
	
 
		   
		Cluster  
		Genome
Proportion
[%]  		
		Genome
Proportion
Adjusted[%]  		
		Size
real  		
		Satellite
probability  		
		Consensus
length  		
		Consensus  
		Graph
layout  		
		Kmer
analysis  		
		Connected
component
index C  		
		Pair
completeness
index
P  		
		Kmer
coverage  		
		|V|  
		|E|  
		Pbs
score  		
		Similarity
based
annotation		 
	
 

 
1

1

2.4000

2.4000

17937

1.66e-21

 

 

seqclust/clustering/clusters/dir_CL0001/CL1_tmb.png

N/A

0.001120

0.5370

 

17937

 905000

 

4.40% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.12% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.07% organelle/plastid
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.01% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RH



 

 
2

2

1.9000

1.9000

14737

1.00e-21

 

 

seqclust/clustering/clusters/dir_CL0002/CL2_tmb.png

N/A

0.002650

0.5790

 

14737

1360000

 

0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.01% Class_I/LINE:LINE-ENDO
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RT



 

 
3

3

1.5000

1.5000

11002

1.16e-20

 

 

seqclust/clustering/clusters/dir_CL0003/CL3_tmb.png

N/A

0.007730

0.2930

 

11002

2410000

 

0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT



 

 
4

4

1.4000

1.4000

10829

8.09e-21

 

 

seqclust/clustering/clusters/dir_CL0004/CL4_tmb.png

N/A

0.001570

0.3750

 

10829

2650000

 

0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT



 

 
5

5

1.2000

1.2000

 9455

1.30e-20

 

 

seqclust/clustering/clusters/dir_CL0005/CL5_tmb.png

N/A

0.003280

0.2810

 

 9455

1320000

 

0.31% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.01% Class_I/pararetrovirus:PARA-RT



 

 
6

6

1.2000

1.2000

 9199

1.16e-20

 

 

seqclust/clustering/clusters/dir_CL0006/CL6_tmb.png

N/A

0.014600

0.2920

 

 9199

3230000

 

0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
7

7

1.2000

1.2000

 9131

3.11e-18

 

 

seqclust/clustering/clusters/dir_CL0007/CL7_tmb.png

N/A

0.071400

0.6860

 

 9131

 450000

 

0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT



 

 
8

8

1.2000

1.2000

 9055

2.34e-21

 

 

seqclust/clustering/clusters/dir_CL0008/CL8_tmb.png

N/A

0.001660

0.5090

 

 9055

 417000

 

0.08% organelle/plastid
0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT



 

 
9

9

1.1000

1.1000

 8675

5.22e-19

 

 

seqclust/clustering/clusters/dir_CL0009/CL9_tmb.png

N/A

0.031800

0.3500

 

 8675

3780000

 

0.08% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.01% organelle/mitochondria
0.01% Class_I/LINE:LINE-RT



 

 
10

10

1.1000

1.1000

 8521

2.70e-22

 

 

seqclust/clustering/clusters/dir_CL0010/CL10_tmb.png

N/A

0.000469

0.6670

 

 8521

 301000

 

22.51% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
13.78% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
6.38% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
1.65% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
1.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.54% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.40% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.39% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.35% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.26% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.07% Class_I/pararetrovirus:PARA-RT
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-PROT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.02% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-outgroup:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT



 

 
11

11

1.1000

1.1000

 8449

1.70e-16

 

 

seqclust/clustering/clusters/dir_CL0011/CL11_tmb.png

N/A

0.075400

0.3840

 

 8449

1960000

 

0.01% organelle/mitochondria
0.01% Class_I/LINE:LINE-RT



 

 
12

12

1.1000

1.1000

 8382

4.29e-22

 

 

seqclust/clustering/clusters/dir_CL0012/CL12_tmb.png

N/A

0.000716

0.6420

 

 8382

 294000

 

0.29% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-INT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LINE:LINE-ENDO
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT



 

 
13

13

1.1000

1.1000

 8126

3.39e-19

 

 

seqclust/clustering/clusters/dir_CL0013/CL13_tmb.png

N/A

0.015900

0.2850

 

 8126

1670000

 

0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH



 

 
14

14

1.0000

1.0000

 7862

1.72e-19

 

 

seqclust/clustering/clusters/dir_CL0014/CL14_tmb.png

N/A

0.041700

0.6420

 

 7862

 516000

 




 

 
15

15

1.0000

1.0000

 7715

1.14e-21

 

 

seqclust/clustering/clusters/dir_CL0015/CL15_tmb.png

N/A

0.004150

0.5680

 

 7715

  53200

 

0.03% Class_I/LINE:LINE-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Alesia:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-GAG
0.01% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase



 

 
16

16

1.0000

1.0000

 7613

1.95e-05

 

 

seqclust/clustering/clusters/dir_CL0016/CL16_tmb.png

N/A

0.515000

0.3090

 

 7613

2630000

 

0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-RT



 

 
17

17

0.9600

0.9600

 7309

8.45e-20

 

 

seqclust/clustering/clusters/dir_CL0017/CL17_tmb.png

N/A

0.033900

0.6150

 

 7309

 440000

 

0.12% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.11% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG



 

 
18

18

0.9400

0.9400

 7137

1.14e-21

 

 

seqclust/clustering/clusters/dir_CL0018/CL18_tmb.png

N/A

0.000841

0.5700

 

 7137

 229000

 

0.07% organelle/plastid
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG



 

 
19

19

0.9200

0.9200

 6977

1.52e-16

 

 

seqclust/clustering/clusters/dir_CL0019/CL19_tmb.png

N/A

0.078100

0.2980

 

 6977

2160000

 

0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT



 

 
20

20

0.9100

0.9100

 6902

2.41e-09

 

 

seqclust/clustering/clusters/dir_CL0020/CL20_tmb.png

N/A

0.315000

0.2950

 

 6902

2200000

 

0.07% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.01% organelle/mitochondria



 

 
21

21

0.8800

0.8800

 6669

1.95e-21

 

 

seqclust/clustering/clusters/dir_CL0021/CL21_tmb.png

N/A

0.009750

0.6730

 

 6669

 315000

 

0.07% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.03% Class_I/LINE:LINE-RT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RH



 

 
22

22

0.8700

0.8700

 6610

6.53e-21

 

 

seqclust/clustering/clusters/dir_CL0022/CL22_tmb.png

N/A

0.000756

0.4030

 

 6610

 181000

 

4.49% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.08% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.02% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase



 

 
23

23

0.8600

0.8600

 6543

1.47e-21

 

 

seqclust/clustering/clusters/dir_CL0023/CL23_tmb.png

N/A

0.001220

0.5520

 

 6543

 243000

 

10.35% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
2.37% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.43% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT



 

 
24

24

0.8400

0.8400

 6377

3.91e-21

 

 

seqclust/clustering/clusters/dir_CL0024/CL24_tmb.png

N/A

0.001250

0.4600

 

 6377

 405000

 

7.86% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.19% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/TAR:Ty1-RT



 

 
25

25

0.8400

0.8400

 6356

4.71e-23

 

 

seqclust/clustering/clusters/dir_CL0025/CL25_tmb.png

N/A

0.000472

0.7710

 

 6356

 119000

 

27.45% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
14.58% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
12.82% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
5.54% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
3.40% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
1.31% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.71% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.52% Class_I/pararetrovirus:PARA-RT
0.46% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.30% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.20% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.19% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-PROT
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.03% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RH
0.02% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-outgroup:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT



 

 
26

26

0.8400

0.8400

 6349

5.91e-19

 

 

seqclust/clustering/clusters/dir_CL0026/CL26_tmb.png

N/A

0.032600

0.2900

 

 6349

 455000

 

0.39% organelle/mitochondria
0.17% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
27

27

0.8300

0.8300

 6275

1.15e-20

 

 

seqclust/clustering/clusters/dir_CL0027/CL27_tmb.png

N/A

0.008290

0.3670

 

 6275

 466000

 

0.05% organelle/plastid
0.03% organelle/mitochondria
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.02% Class_II/Subclass_2/Helitron:Helitron-HEL2
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-RH



 

 
28

28

0.8300

0.8300

 6252

1.10e-21

 

 

seqclust/clustering/clusters/dir_CL0028/CL28_tmb.png

N/A

0.005120

0.7190

 

 6252

 178000

 

0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT



 

 
29

29

0.8100

0.8100

 6106

5.57e-21

 

 

seqclust/clustering/clusters/dir_CL0029/CL29_tmb.png

N/A

0.001150

0.4180

 

 6106

 104000

 

0.44% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH



 

 
30

30

0.7900

0.7900

 5996

2.52e-20

 

 

seqclust/clustering/clusters/dir_CL0030/CL30_tmb.png

N/A

0.018200

0.6580

 

 5996

 218000

 

0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT



 

 
31

31

0.7800

0.7800

 5923

1.48e-08

 

 

seqclust/clustering/clusters/dir_CL0031/CL31_tmb.png

N/A

0.341000

0.6220

 

 5923

 741000

 

0.10% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.02% Class_I/LINE:LINE-RT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT



 

 
32

32

0.7700

0.7700

 5808

5.62e-19

 

 

seqclust/clustering/clusters/dir_CL0032/CL32_tmb.png

N/A

0.027500

0.3160

 

 5808

 709000

 

0.03% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.02% organelle/mitochondria
0.02% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LINE:LINE-RT



 

 
33

33

0.7600

0.7600

 5769

6.84e-23

 

 

seqclust/clustering/clusters/dir_CL0033/CL33_tmb.png

N/A

0.000173

0.7530

 

 5769

 254000

 

24.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
12.88% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
8.29% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
5.49% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.94% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.76% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.42% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.16% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.12% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.07% Class_I/pararetrovirus:PARA-RT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-outgroup:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.02% Class_I/LINE:LINE-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RT



 

 
34

34

0.7600

0.7600

 5739

1.76e-23

 

 

seqclust/clustering/clusters/dir_CL0034/CL34_tmb.png

N/A

0.000174

0.8210

 

 5739

 106000

 

22.11% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
13.43% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
8.35% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
8.29% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
3.83% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
1.25% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.68% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.56% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.42% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.23% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.09% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.02% organelle/mitochondria
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RT



 

 
35

35

0.7500

0.7500

 5713

6.11e-07

 

 

seqclust/clustering/clusters/dir_CL0035/CL35_tmb.png

N/A

0.405000

0.5080

 

 5713

  93600

 

0.02% Class_I/LINE:LINE-ENDO
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/Alesia:Ty1-GAG
0.02% Class_II/Subclass_1/TIR/PIF_Harbinger:Harbinger-TPase



 

 
36

36

0.7500

0.7500

 5673

4.98e-22

 

 

seqclust/clustering/clusters/dir_CL0036/CL36_tmb.png

N/A

0.002640

0.6310

 

 5673

 192000

 

0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
37

37

0.7000

0.7000

 5318

2.03e-18

 

 

seqclust/clustering/clusters/dir_CL0037/CL37_tmb.png

N/A

0.058700

0.6270

 

 5318

  73300

 




 

 
38

38

0.6800

0.6800

 5144

1.28e-19

 

 

seqclust/clustering/clusters/dir_CL0038/CL38_tmb.png

N/A

0.022600

0.5000

 

 5144

 156000

 

0.17% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.02% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase



 

 
39

39

0.6000

0.6000

 4515

8.65e-21

 

 

seqclust/clustering/clusters/dir_CL0039/CL39_tmb.png

N/A

0.012800

0.4730

 

 4515

 463000

 

0.66% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT



 

 
40

40

0.5600

0.5600

 4228

5.67e-20

 

 

seqclust/clustering/clusters/dir_CL0040/CL40_tmb.png

N/A

0.020800

0.5910

 

 4226

  70000

 

0.38% organelle/mitochondria
0.05% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-INT



 

 
41

41

0.5500

0.5500

 4205

2.68e-09

 

 

seqclust/clustering/clusters/dir_CL0041/CL41_tmb.png

N/A

0.312000

0.3710

 

 4205

  85800

 

0.19% Class_I/LINE:LINE-RT
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-CHDII
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH



 

 
42

42

0.5500

0.5500

 4182

9.81e-23

 

 

seqclust/clustering/clusters/dir_CL0042/CL42_tmb.png

N/A

0.001430

0.7320

 

 4182

 154000

 

25.80% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
9.21% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
5.98% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
1.34% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.96% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.62% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.36% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.26% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.22% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.02% Class_I/pararetrovirus:PARA-RT



 

 
43

43

0.5400

0.5400

 4069

6.04e-07

 

 

seqclust/clustering/clusters/dir_CL0043/CL43_tmb.png

N/A

0.400000

0.5040

 

 4069

 387000

 

0.17% organelle/plastid
0.05% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-RT



 

 
44

44

0.5400

0.5400

 4061

9.81e-23

 

 

seqclust/clustering/clusters/dir_CL0044/CL44_tmb.png

N/A

0.000739

0.7270

 

 4061

 199000

 

51.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
12.76% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
10.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT



 

 
45

45

0.5300

0.5300

 4039

5.69e-23

 

 

seqclust/clustering/clusters/dir_CL0045/CL45_tmb.png

N/A

0.000743

0.7630

 

 4039

 114000

 

44.57% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
21.24% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
7.80% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.89% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.37% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.20% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RH



 

 
46

46

0.5100

0.5100

 3894

3.16e-22

 

 

seqclust/clustering/clusters/dir_CL0046/CL46_tmb.png

N/A

0.000257

0.6630

 

 3894

 191000

 

70.90% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
4.29% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH



 

 
47

47

0.4600

0.4600

 3509

3.35e-21

 

 

seqclust/clustering/clusters/dir_CL0047/CL47_tmb.png

N/A

0.023100

0.8030

 

 3509

  35200

 

16.67% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
8.35% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
5.59% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
4.25% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
3.28% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
2.51% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
0.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.09% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.09% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RH
0.03% Class_II/Subclass_1/TIR/PIF_Harbinger:Harbinger-TPase
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT



 

 
48

48

0.3700

0.3700

 2783

1.05e-20

 

 

seqclust/clustering/clusters/dir_CL0048/CL48_tmb.png

N/A

0.010400

0.2410

 

 2783

 327000

 

0.18% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.18% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.04% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT



 

 
49

49

0.3600

0.3600

 2748

5.99e-06

 

 

seqclust/clustering/clusters/dir_CL0049/CL49_tmb.png

N/A

0.497000

0.2710

 

 2748

 404000

 

0.18% organelle/plastid
0.04% organelle/mitochondria
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT



 

 
50

50

0.3500

0.3500

 2615

1.65e-22

 

 

seqclust/clustering/clusters/dir_CL0050/CL50_tmb.png

N/A

0.000382

0.7050

 

 2615

  16800

 

10.48% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
5.74% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
4.86% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
3.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
3.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
2.98% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.65% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.04% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatI:Ty3-INT
0.04% Class_I/LINE:LINE-RT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT



 

 
51

51

0.3400

0.3400

 2605

2.52e-20

 

 

seqclust/clustering/clusters/dir_CL0051/CL51_tmb.png

N/A

0.018000

0.6600

 

 2605

  62900

 

0.04% Class_I/LTR/Ty1_copia/TAR:Ty1-INT



 

 
52

52

0.3400

0.3400

 2599

5.08e-08

 

 

seqclust/clustering/clusters/dir_CL0052/CL52_tmb.png

N/A

0.431000

0.1060

 

 2599

 397000

 

0.23% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII



 

 
53

53

0.3400

0.3400

 2584

5.76e-22

 

 

seqclust/clustering/clusters/dir_CL0053/CL53_tmb.png

N/A

0.001160

0.6220

 

 2584

  32600

 

0.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.04% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
54

54

0.3300

0.3300

 2512

5.76e-22

 

 

seqclust/clustering/clusters/dir_CL0054/CL54_tmb.png

N/A

0.004780

0.6200

 

 2512

  22800

 

0.24% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.12% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.04% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
0.04% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
0.04% Class_II/Subclass_1/TIR/hAT:hAT-TPase



 

 
55

55

0.3300

0.3300

 2488

1.12e-10

 

 

seqclust/clustering/clusters/dir_CL0055/CL55_tmb.png

N/A

0.275000

0.6510

 

 2488

  25300

 

4.78% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.56% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.04% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.04% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
0.04% Class_I/LTR/Ty1_copia/Tork:Ty1-RT



 

 
56

56

0.3300

0.3300

 2486

3.85e-04

 

 

seqclust/clustering/clusters/dir_CL0056/CL56_tmb.png

N/A

0.849000

0.3160

 

 2486

 785000

 




 

 
59

59

0.3000

0.3000

 2290

1.57e-20

 

 

seqclust/clustering/clusters/dir_CL0059/CL59_tmb.png

N/A

0.002620

0.2080

 

 2290

 112000

 

0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/nonchromo-outgroup:Ty3-GAG



 

 
60

60

0.2900

0.2900

 2168

1.66e-21

 

 

seqclust/clustering/clusters/dir_CL0060/CL60_tmb.png

N/A

0.000461

0.5440

 

 2168

  20400

 

0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.05% organelle/plastid
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT



 

 
61

61

0.2800

0.2800

 2086

9.20e-21

 

 

seqclust/clustering/clusters/dir_CL0061/CL61_tmb.png

N/A

0.000479

0.3540

 

 2086

  12500

 

0.10% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.10% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.05% Class_I/LINE:LINE-ENDO
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.05% organelle/plastid



 

 
62

62

0.2700

0.2700

 2048

1.14e-21

 

 

seqclust/clustering/clusters/dir_CL0062/CL62_tmb.png

N/A

0.001460

0.5730

 

 2048

  31400

 

4.79% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
1.37% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
1.12% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.39% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.29% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.05% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT



 

 
63

63

0.2600

0.2600

 1957

2.20e-13

 

 

seqclust/clustering/clusters/dir_CL0063/CL63_tmb.png

N/A

0.167000

0.2680

 

 1957

 155000

 

1.43% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
1.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH



 

 
64

64

0.2500

0.2500

 1909

2.90e-21

 

 

seqclust/clustering/clusters/dir_CL0064/CL64_tmb.png

N/A

0.000524

0.4870

 

 1909

  12800

 

20.69% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
11.37% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
3.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.05% Class_I/LTR/Ty1_copia/Tork:Ty1-INT



 

 
65

65

0.2500

0.2500

 1885

6.94e-20

 

 

seqclust/clustering/clusters/dir_CL0065/CL65_tmb.png

N/A

0.024400

0.5720

 

 1885

  21100

 




 

 
66

66

0.2200

0.2200

 1699

2.09e-21

 

 

seqclust/clustering/clusters/dir_CL0066/CL66_tmb.png

N/A

0.000589

0.5240

 

 1699

   9710

 

51.74% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
16.66% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
9.54% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.77% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-INT
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH



 

 
67

67

0.2200

0.2200

 1699

7.57e-20

 

 

seqclust/clustering/clusters/dir_CL0067/CL67_tmb.png

N/A

0.026500

0.6320

 

 1699

  13600

 

0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT



 

 
68

68

0.2200

0.2200

 1679

6.94e-20

 

 

seqclust/clustering/clusters/dir_CL0068/CL68_tmb.png

N/A

0.024400

0.5710

 

 1679

  83900

 

0.60% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG



 

 
69

69

0.2200

0.2200

 1673

5.76e-22

 

 

seqclust/clustering/clusters/dir_CL0069/CL69_tmb.png

N/A

0.000598

0.6230

 

 1673

   7860

 

7.35% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
6.52% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
3.53% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
2.27% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.24% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.18% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.18% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.06% organelle/plastid



 

 
70

70

0.2200

0.2200

 1649

3.55e-21

 

 

seqclust/clustering/clusters/dir_CL0070/CL70_tmb.png

N/A

0.000606

0.4670

 

 1649

  10100

 

0.85% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG
0.49% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.06% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG



 

 
71

71

0.2000

0.2000

 1527

1.28e-19

 

 

seqclust/clustering/clusters/dir_CL0071/CL71_tmb.png

N/A

0.019000

0.5030

 

 1527

   6740

 

0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH



 

 
72

72

0.2000

0.2000

 1526

7.63e-16

 

 

seqclust/clustering/clusters/dir_CL0072/CL72_tmb.png

N/A

0.104000

0.1950

 

 1526

  14100

 

0.20% organelle/plastid
0.07% organelle/mitochondria
0.07% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT



 

 
73

73

0.2000

0.2000

 1524

3.91e-21

 

 

seqclust/clustering/clusters/dir_CL0073/CL73_tmb.png

N/A

0.000656

0.4630

 

 1524

   7690

 

4.27% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
2.56% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.52% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.20% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.13% Class_II/Subclass_2/Helitron:Helitron-HEL2
0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.07% Class_I/LINE:LINE-RT
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT



 

 
74

74

0.1900

0.1900

 1468

2.69e-19

 

 

seqclust/clustering/clusters/dir_CL0074/CL74_tmb.png

N/A

0.018400

0.3710

 

 1468

   6820

 

0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT



 

 
75

75

0.1900

0.1900

 1463

3.21e-21

 

 

seqclust/clustering/clusters/dir_CL0075/CL75_tmb.png

N/A

0.004780

0.4790

 

 1463

   9990

 

0.07% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT



 

 
76

76

0.1900

0.1900

 1402

2.34e-21

 

 

seqclust/clustering/clusters/dir_CL0076/CL76_tmb.png

N/A

0.000713

0.5090

 

 1402

   5600

 

12.91% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
9.63% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
7.77% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
3.35% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
2.07% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.21% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.21% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
0.07% Class_I/LTR/Ty1_copia/Tork:Ty1-RT



 

 
77

77

0.1800

0.1800

 1357

3.21e-23

 

 

seqclust/clustering/clusters/dir_CL0077/CL77_tmb.png

N/A

0.000737

0.7930

 

 1357

   8640

 

0.15% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.07% Class_I/LTR/Ty1_copia/TAR:Ty1-RT



 

 
78

78

0.1700

0.1700

 1304

1.86e-21

 

 

seqclust/clustering/clusters/dir_CL0078/CL78_tmb.png

N/A

0.000767

0.5250

 

 1304

   8450

 

0.08% Class_I/LTR/Ty1_copia/Tork:Ty1-RT



 

 
79

79

0.1700

0.1700

 1265

1.66e-21

 

 

seqclust/clustering/clusters/dir_CL0079/CL79_tmb.png

N/A

0.000791

0.5390

 

 1265

   7430

 

0.16% Class_I/LINE:LINE-ENDO
0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-INT



 

 
80

80

0.1600

0.1600

 1249

3.55e-21

 

 

seqclust/clustering/clusters/dir_CL0080/CL80_tmb.png

N/A

0.000801

0.4680

 

 1249

   8480

 




 

 
81

81

0.1600

0.1600

 1244

7.98e-19

 

 

seqclust/clustering/clusters/dir_CL0081/CL81_tmb.png

N/A

0.037000

0.0761

 

 1244

 244000

 

0.24% organelle/mitochondria
0.08% organelle/plastid



 

 
82

82

0.1500

0.1500

 1129

4.71e-23

 

 

seqclust/clustering/clusters/dir_CL0082/CL82_tmb.png

N/A

0.000886

0.7670

 

 1129

   9740

 

18.51% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
11.60% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
10.36% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
5.76% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
2.92% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG
0.44% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.09% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT



 

 
83

83

0.1400

0.1400

 1070

1.10e-20

 

 

seqclust/clustering/clusters/dir_CL0083/CL83_tmb.png

N/A

0.007480

0.2620

 

 1070

  79500

 

0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT



 

 
84

84

0.1400

0.1400

 1036

7.56e-21

 

 

seqclust/clustering/clusters/dir_CL0084/CL84_tmb.png

N/A

0.000965

0.3830

 

 1036

   5330

 

0.10% organelle/plastid



 

 
85

85

0.1400

0.1400

 1033

3.21e-23

 

 

seqclust/clustering/clusters/dir_CL0085/CL85_tmb.png

N/A

0.000968

0.7900

 

 1033

   3840

 

0.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.10% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT
0.10% organelle/plastid



 

 
86

86

0.1300

0.1300

 1016

4.69e-21

 

 

seqclust/clustering/clusters/dir_CL0086/CL86_tmb.png

N/A

0.000984

0.4430

 

 1016

   3190

 

0.10% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RH



 

 
87

87

0.1200

0.1200

  924

7.41e-15

 

 

seqclust/clustering/clusters/dir_CL0087/CL87_tmb.png

N/A

0.129000

0.5430

 

  924

  27800

 




 

 
88

88

0.1200

0.1200

  920

5.69e-23

 

 

seqclust/clustering/clusters/dir_CL0088/CL88_tmb.png

N/A

0.001090

0.7620

 

  920

   4550

 

19.13% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
12.17% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
11.41% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
3.48% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
2.83% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG
0.11% organelle/mitochondria
0.11% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT



 

 
89

89

0.1100

0.1100

  829

2.26e-17

 

 

seqclust/clustering/clusters/dir_CL0089/CL89_tmb.png

N/A

0.092900

0.6920

 

  829

  18300

 

0.12% organelle/plastid



 

 
90

90

0.0970

0.0970

  732

9.72e-21

 

 

seqclust/clustering/clusters/dir_CL0090/CL90_tmb.png

N/A

0.005460

0.4350

 

  732

   6450

 

0.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.14% organelle/plastid



 

 
91

91

0.0950

0.0950

  720

3.55e-21

 

 

seqclust/clustering/clusters/dir_CL0091/CL91_tmb.png

N/A

0.001390

0.4690

 

  720

  11000

 

0.14% Class_I/LINE:LINE-RT



 

 
92

92

0.0870

0.0870

  659

1.29e-21

 

 

seqclust/clustering/clusters/dir_CL0092/CL92_tmb.png

N/A

0.001520

0.5620

 

  659

   4110

 

0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.15% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
93

93

0.0810

0.0810

  611

3.16e-17

 

 

seqclust/clustering/clusters/dir_CL0093/CL93_tmb.png

N/A

0.067100

0.2200

 

  611

   2570

 




 

 
94

94

0.0760

0.0760

  577

1.76e-23

 

 

seqclust/clustering/clusters/dir_CL0094/CL94_tmb.png

N/A

0.001730

0.8200

 

  577

   4240

 

26.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
16.64% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
12.48% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
5.89% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT



 

 
95

95

0.0760

0.0760

  576

1.00e-21

 

 

seqclust/clustering/clusters/dir_CL0095/CL95_tmb.png

N/A

0.001740

0.5780

 

  576

   5590

 

2.78% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.17% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
0.17% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT



 

 
96

96

0.0710

0.0710

  541

6.12e-24

 

 

seqclust/clustering/clusters/dir_CL0096/CL96_tmb.png

N/A

0.001850

0.8660

 

  541

   3590

 

99.45% organelle/plastid



 

 
97

97

0.0640

0.0640

  485

1.66e-21

 

 

seqclust/clustering/clusters/dir_CL0097/CL97_tmb.png

N/A

0.002060

0.5400

 

  485

   2980

 

11.96% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG



 

 
98

98

0.0600

0.0600

  454

6.64e-22

 

 

seqclust/clustering/clusters/dir_CL0098/CL98_tmb.png

N/A

0.002200

0.6100

 

  454

   2200

 




 

 
99

99

0.0590

0.0590

  447

1.17e-22

 

 

seqclust/clustering/clusters/dir_CL0099/CL99_tmb.png

N/A

0.002240

0.7190

 

  447

   2000

 

20.36% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
14.77% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
12.75% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
1.34% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
1.12% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.89% organelle/mitochondria
0.67% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.22% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.22% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.22% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH



 

 
101

101

0.0560

0.0560

  428

9.20e-21

 

 

seqclust/clustering/clusters/dir_CL0101/CL101_tmb.png

N/A

0.002340

0.3500

 

  428

   2760

 

0.23% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT



 

 
102

102

0.0540

0.0540

  412

3.91e-21

 

 

seqclust/clustering/clusters/dir_CL0102/CL102_tmb.png

N/A

0.002430

0.4560

 

  412

   1740

 

0.24% Class_I/LTR/Ty1_copia/Angela:Ty1-INT



 

 
103

103

0.0540

0.0540

  408

1.17e-22

 

 

seqclust/clustering/clusters/dir_CL0103/CL103_tmb.png

N/A

0.002450

0.7220

 

  408

   2710

 

25.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
15.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH



 

 
104

104

0.0520

0.0520

  397

1.35e-20

 

 

seqclust/clustering/clusters/dir_CL0104/CL104_tmb.png

N/A

0.002520

0.2720

 

  397

   2280

 

0.50% organelle/plastid



 

 
105

105

0.0440

0.0440

  336

2.34e-21

 

 

seqclust/clustering/clusters/dir_CL0105/CL105_tmb.png

N/A

0.002980

0.5070

 

  336

   3040

 




 

 
106

106

0.0440

0.0440

  336

1.17e-23

 

 

seqclust/clustering/clusters/dir_CL0106/CL106_tmb.png

N/A

0.002980

0.8360

 

  336

   1940

 

100.00% organelle/plastid



 

 
107

107

0.0410

0.0410

  312

1.09e-20

 

 

seqclust/clustering/clusters/dir_CL0107/CL107_tmb.png

N/A

0.003210

0.3220

 

  312

   1590

 

0.32% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT



 

 
108

108

0.0400

0.0400

  304

2.16e-23

 

 

seqclust/clustering/clusters/dir_CL0108/CL108_tmb.png

N/A

0.003290

0.8100

 

  304

   1960

 

100.00% organelle/plastid



 

 
109

109

0.0390

0.0390

  296

5.69e-23

 

 

seqclust/clustering/clusters/dir_CL0109/CL109_tmb.png

N/A

0.003380

0.7620

 

  296

    897

 

30.07% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
17.57% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
4.73% organelle/mitochondria
1.35% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.34% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.34% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT



 

 
110

110

0.0390

0.0390

  295

1.44e-23

 

 

seqclust/clustering/clusters/dir_CL0110/CL110_tmb.png

N/A

0.003390

0.8320

 

  295

   1790

 

98.98% organelle/plastid
1.02% organelle/mitochondria



 

 
111

111

0.0380

0.0380

  289

2.06e-04

 

 

seqclust/clustering/clusters/dir_CL0111/CL111_tmb.png

N/A

0.547000

0.4450

 

  289

    850

 

9.00% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
5.19% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
2.08% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
1.04% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT



 

 
112

112

0.0340

0.0340

  256

1.73e-12

 

 

seqclust/clustering/clusters/dir_CL0112/CL112_tmb.png

N/A

0.188000

0.4070

 

  256

    728

 

0.39% organelle/plastid
0.39% Class_II/Subclass_1/TIR/hAT:hAT-TPase



 

 
113

113

0.0330

0.0330

  252

2.51e-08

 

 

seqclust/clustering/clusters/dir_CL0113/CL113_tmb.png

N/A

0.341000

0.5370

 

  252

   2160

 




 

 
114

114

0.0330

0.0330

  249

9.75e-21

 

 

seqclust/clustering/clusters/dir_CL0114/CL114_tmb.png

N/A

0.004020

0.3390

 

  249

   1700

 




 

 
115

115

0.0320

0.0320

  245

2.90e-21

 

 

seqclust/clustering/clusters/dir_CL0115/CL115_tmb.png

N/A

0.004080

0.4940

 

  245

    682

 

46.94% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
11.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
5.71% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
3.27% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.82% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.82% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT



 

 
116

116

0.0320

0.0320

  240

4.98e-22

 

 

seqclust/clustering/clusters/dir_CL0116/CL116_tmb.png

N/A

0.004170

0.6330

 

  240

   1010

 

8.75% Class_I/LTR/Ty1_copia/Bianca:Ty1-RH
0.42% Class_I/LTR/Ty1_copia/Angela:Ty1-RT



 

 
117

117

0.0310

0.0310

  237

6.12e-24

 

 

seqclust/clustering/clusters/dir_CL0117/CL117_tmb.png

N/A

0.004220

0.8660

 

  237

   1650

 

100.00% organelle/plastid



 

 
118

118

0.0300

0.0300

  231

1.44e-23

 

 

seqclust/clustering/clusters/dir_CL0118/CL118_tmb.png

N/A

0.004330

0.8330

 

  231

   1550

 

100.00% organelle/plastid
0.43% Class_I/LINE:LINE-RT



 

 
119

119

0.0300

0.0300

  225

4.29e-22

 

 

seqclust/clustering/clusters/dir_CL0119/CL119_tmb.png

N/A

0.004440

0.6420

 

  225

   1000

 

42.67% Class_I/LINE:LINE-RT



 

 
121

121

0.0270

0.0270

  202

1.47e-21

 

 

seqclust/clustering/clusters/dir_CL0121/CL121_tmb.png

N/A

0.004950

0.5540

 

  202

   1960

 

0.50% Class_I/LTR/Ty1_copia/Ale:Ty1-RH



 

 
122

122

0.0260

0.0260

  198

7.55e-22

 

 

seqclust/clustering/clusters/dir_CL0122/CL122_tmb.png

N/A

0.005050

0.7520

 

  198

   1060

 

33.33% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
17.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT



 

 
123

123

0.0260

0.0260

  196

1.09e-20

 

 

seqclust/clustering/clusters/dir_CL0123/CL123_tmb.png

N/A

0.005100

0.4000

 

  196

    508

 




 

 
124

124

0.0250

0.0250

  191

3.80e-22

 

 

seqclust/clustering/clusters/dir_CL0124/CL124_tmb.png

N/A

0.005240

0.8020

 

  191

   1030

 

100.00% organelle/plastid



 

 
125

125

0.0250

0.0250

  189

2.43e-22

 

 

seqclust/clustering/clusters/dir_CL0125/CL125_tmb.png

N/A

0.005290

0.8350

 

  189

   1090

 

99.47% organelle/plastid
0.53% organelle/mitochondria



 

 
126

126

0.0240

0.0240

  182

1.15e-20

 

 

seqclust/clustering/clusters/dir_CL0126/CL126_tmb.png

N/A

0.005490

0.3680

 

  182

    836

 




 

 
127

127

0.0240

0.0240

  179

1.18e-20

 

 

seqclust/clustering/clusters/dir_CL0127/CL127_tmb.png

N/A

0.005590

0.3360

 

  179

    641

 




 

 
128

128

0.0230

0.0230

  177

1.02e-17

 

 

seqclust/clustering/clusters/dir_CL0128/CL128_tmb.png

N/A

0.056500

0.3510

 

  177

    676

 




 

 
129

129

0.0230

0.0230

  173

1.05e-20

 

 

seqclust/clustering/clusters/dir_CL0129/CL129_tmb.png

N/A

0.005780

0.2360

 

  173

    550

 




 

 
130

130

0.0230

0.0230

  171

1.06e-20

 

 

seqclust/clustering/clusters/dir_CL0130/CL130_tmb.png

N/A

0.005850

0.4130

 

  171

    478

 

0.58% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT



 

 
131

131

0.0220

0.0220

  167

1.13e-20

 

 

seqclust/clustering/clusters/dir_CL0131/CL131_tmb.png

N/A

0.005990

0.3800

 

  167

    716

 




 

 
132

132

0.0210

0.0210

  157

4.11e-21

 

 

seqclust/clustering/clusters/dir_CL0132/CL132_tmb.png

N/A

0.006370

0.5860

 

  157

    458

 




 

 
133

133

0.0210

0.0210

  156

8.88e-21

 

 

seqclust/clustering/clusters/dir_CL0133/CL133_tmb.png

N/A

0.006410

0.1910

 

  156

    329

 




 

 
134

134

0.0200

0.0200

  150

8.50e-21

 

 

seqclust/clustering/clusters/dir_CL0134/CL134_tmb.png

N/A

0.006670

0.1810

 

  150

    507

 




 

 
135

135

0.0190

0.0190

  147

7.55e-22

 

 

seqclust/clustering/clusters/dir_CL0135/CL135_tmb.png

N/A

0.006800

0.7500

 

  147

    530

 

100.00% organelle/plastid
2.04% Class_II/Subclass_1/TIR/PIF_Harbinger:Harbinger-TPase



 

 
136

136

0.0190

0.0190

  146

1.75e-21

 

 

seqclust/clustering/clusters/dir_CL0136/CL136_tmb.png

N/A

0.006850

0.6780

 

  146

    985

 




 

 
137

137

0.0190

0.0190

  146

1.75e-21

 

 

seqclust/clustering/clusters/dir_CL0137/CL137_tmb.png

N/A

0.006850

0.6780

 

  146

    999

 

100.00% organelle/plastid



 

 
138

138

0.0190

0.0190

  141

1.03e-20

 

 

seqclust/clustering/clusters/dir_CL0138/CL138_tmb.png

N/A

0.007090

0.4240

 

  141

    300

 

44.68% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
19.86% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
14.18% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH



 

 
139

139

0.0180

0.0180

  138

1.40e-21

 

 

seqclust/clustering/clusters/dir_CL0139/CL139_tmb.png

N/A

0.007250

0.7040

 

  138

    555

 




 

 
140

140

0.0180

0.0180

  134

1.13e-20

 

 

seqclust/clustering/clusters/dir_CL0140/CL140_tmb.png

N/A

0.007460

0.3810

 

  134

    380

 




 

 
141

141

0.0180

0.0180

  133

1.15e-20

 

 

seqclust/clustering/clusters/dir_CL0141/CL141_tmb.png

N/A

0.007520

0.3710

 

  133

    273

 




 

 
142

142

0.0170

0.0170

  132

1.14e-20

 

 

seqclust/clustering/clusters/dir_CL0142/CL142_tmb.png

N/A

0.007580

0.2820

 

  132

    394

 




 

 
144

144

0.0170

0.0170

  126

1.09e-20

 

 

seqclust/clustering/clusters/dir_CL0144/CL144_tmb.png

N/A

0.007940

0.4000

 

  126

    441

 

9.52% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
1.59% Class_I/LTR/Ty1_copia/Angela:Ty1-PROT



 

 
145

145

0.0160

0.0160

  125

1.02e-20

 

 

seqclust/clustering/clusters/dir_CL0145/CL145_tmb.png

N/A

0.008000

0.2250

 

  125

    638

 

0.80% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT



 

 
146

146

0.0160

0.0160

  123

2.19e-14

 

 

seqclust/clustering/clusters/dir_CL0146/CL146_tmb.png

N/A

0.130000

0.4470

 

  123

    281

 




 

 
147

147

0.0160

0.0160

  122

9.24e-21

 

 

seqclust/clustering/clusters/dir_CL0147/CL147_tmb.png

N/A

0.008200

0.1960

 

  122

    641

 




 

 
148

148

0.0160

0.0160

  119

2.99e-12

 

 

seqclust/clustering/clusters/dir_CL0148/CL148_tmb.png

N/A

0.210000

0.5450

 

  119

   1050

 




 

 
149

149

0.0160

0.0160

  118

4.80e-21

 

 

seqclust/clustering/clusters/dir_CL0149/CL149_tmb.png

N/A

0.008470

0.5730

 

  118

    308

 

31.36% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG



 

 
150

150

0.0160

0.0160

  118

6.17e-21

 

 

seqclust/clustering/clusters/dir_CL0150/CL150_tmb.png

N/A

0.008470

0.1240

 

  118

   1030

 

0.85% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH



 

 
151

151

0.0150

0.0150

  117

5.91e-21

 

 

seqclust/clustering/clusters/dir_CL0151/CL151_tmb.png

N/A

0.008550

0.5390

 

  117

    372

 




 

 
152

152

0.0150

0.0150

  112

1.16e-20

 

 

seqclust/clustering/clusters/dir_CL0152/CL152_tmb.png

N/A

0.008930

0.2870

 

  112

    226

 




 

 
153

153

0.0140

0.0140

  109

9.92e-21

 

 

seqclust/clustering/clusters/dir_CL0153/CL153_tmb.png

N/A

0.009170

0.2250

 

  109

    394

 




 

 
154

154

0.0140

0.0140

  108

6.95e-21

 

 

seqclust/clustering/clusters/dir_CL0154/CL154_tmb.png

N/A

0.009260

0.1370

 

  108

    674

 

0.93% Class_I/LINE:LINE-RT



 

 
155

155

0.0140

0.0140

  105

2.64e-21

 

 

seqclust/clustering/clusters/dir_CL0155/CL155_tmb.png

N/A

0.009520

0.6410

 

  105

    463

 

25.71% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG



 

 
156

156

0.0140

0.0140

  105

3.28e-22

 

 

seqclust/clustering/clusters/dir_CL0156/CL156_tmb.png

N/A

0.009520

0.8100

 

  105

    338

 

100.00% organelle/plastid



 

 
158

158

0.0140

0.0140

  104

7.88e-21

 

 

seqclust/clustering/clusters/dir_CL0158/CL158_tmb.png

N/A

0.009620

0.4860

 

  104

    377

 




 

 
159

159

0.0130

0.0130

  101

7.36e-05

 

 

seqclust/clustering/clusters/dir_CL0159/CL159_tmb.png

N/A

0.693000

0.1740

 

  101

   1240

 

0.99% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.99% Class_I/LTR/Ty1_copia/Tork:Ty1-RT



 

 
160

160

0.0130

0.0130

  100

1.78e-22

 

 

seqclust/clustering/clusters/dir_CL0160/CL160_tmb.png

N/A

0.010000

0.8520

 

  100

    352

 

100.00% organelle/plastid



 

 
161

161

0.0130

0.0130

   99

3.80e-22

 

 

seqclust/clustering/clusters/dir_CL0161/CL161_tmb.png

N/A

0.010100

0.8000

 

   99

    445

 

98.99% organelle/plastid
1.01% organelle/mitochondria



 

 
162

162

0.0130

0.0130

   98

3.28e-22

 

 

seqclust/clustering/clusters/dir_CL0162/CL162_tmb.png

N/A

0.010200

0.8150

 

   98

    332

 

100.00% organelle/plastid
2.04% Class_I/LINE:LINE-RH



 

 
163

163

0.0130

0.0130

   97

5.91e-21

 

 

seqclust/clustering/clusters/dir_CL0163/CL163_tmb.png

N/A

0.010300

0.5400

 

   97

    287

 

18.56% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
12.37% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
5.15% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH



 

 
164

164

0.0130

0.0130

   97

1.15e-20

 

 

seqclust/clustering/clusters/dir_CL0164/CL164_tmb.png

N/A

0.010300

0.3660

 

   97

    365

 

35.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
6.19% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
3.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
3.09% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG



 

 
165

165

0.0130

0.0130

   95

5.10e-15

 

 

seqclust/clustering/clusters/dir_CL0165/CL165_tmb.png

N/A

0.105000

0.4390

 

   95

    260

 




 

 
166

166

0.0130

0.0130

   95

1.60e-11

 

 

seqclust/clustering/clusters/dir_CL0166/CL166_tmb.png

N/A

0.232000

0.3190

 

   95

    207

 




 

 
167

167

0.0120

0.0120

   92

3.80e-22

 

 

seqclust/clustering/clusters/dir_CL0167/CL167_tmb.png

N/A

0.010900

0.8040

 

   92

    344

 

100.00% organelle/plastid



 

 
168

168

0.0120

0.0120

   90

1.08e-20

 

 

seqclust/clustering/clusters/dir_CL0168/CL168_tmb.png

N/A

0.011100

0.2500

 

   90

    222

 

63.33% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
1.11% Class_I/LTR/Ty1_copia/TAR:Ty1-INT



 

 
169

169

0.0120

0.0120

   90

1.00e-20

 

 

seqclust/clustering/clusters/dir_CL0169/CL169_tmb.png

N/A

0.011100

0.4290

 

   90

    230

 

74.44% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
3.33% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
2.22% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
1.11% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT



 

 
170

170

0.0120

0.0120

   89

1.17e-20

 

 

seqclust/clustering/clusters/dir_CL0170/CL170_tmb.png

N/A

0.011200

0.3480

 

   89

    179

 

98.88% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
171

171

0.0110

0.0110

   87

1.13e-20

 

 

seqclust/clustering/clusters/dir_CL0171/CL171_tmb.png

N/A

0.011500

0.3810

 

   87

    322

 

66.67% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
8.05% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
2.30% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
172

172

0.0110

0.0110

   86

1.06e-20

 

 

seqclust/clustering/clusters/dir_CL0172/CL172_tmb.png

N/A

0.011600

0.4100

 

   86

    326

 




 

 
173

173

0.0110

0.0110

   86

3.18e-21

 

 

seqclust/clustering/clusters/dir_CL0173/CL173_tmb.png

N/A

0.011600

0.6230

 

   86

    339

 




 

 
174

174

0.0110

0.0110

   85

9.74e-22

 

 

seqclust/clustering/clusters/dir_CL0174/CL174_tmb.png

N/A

0.011800

0.7350

 

   85

    468

 

100.00% organelle/plastid



 

 
175

175

0.0110

0.0110

   84

9.92e-21

 

 

seqclust/clustering/clusters/dir_CL0175/CL175_tmb.png

N/A

0.011900

0.2170

 

   84

    222

 




 

 
176

176

0.0110

0.0110

   82

1.95e-21

 

 

seqclust/clustering/clusters/dir_CL0176/CL176_tmb.png

N/A

0.012200

0.6730

 

   82

    193

 

42.68% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
8.54% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
1.22% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
1.22% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
1.22% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
1.22% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
1.22% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT



 

 
177

177

0.0110

0.0110

   82

1.11e-20

 

 

seqclust/clustering/clusters/dir_CL0177/CL177_tmb.png

N/A

0.012200

0.3900

 

   82

    241

 




 

 
178

178

0.0110

0.0110

   82

1.24e-21

 

 

seqclust/clustering/clusters/dir_CL0178/CL178_tmb.png

N/A

0.012200

0.7080

 

   82

    320

 

95.12% organelle/plastid



 

 
179

179

0.0110

0.0110

   81

1.42e-12

 

 

seqclust/clustering/clusters/dir_CL0179/CL179_tmb.png

N/A

0.185000

0.3500

 

   81

    426

 

1.23% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
180

180

0.0100

0.0100

   79

1.92e-15

 

 

seqclust/clustering/clusters/dir_CL0180/CL180_tmb.png

N/A

0.101000

0.4630

 

   79

    243

 




 

 
181

181

0.0100

0.0100

   79

5.53e-21

 

 

seqclust/clustering/clusters/dir_CL0181/CL181_tmb.png

N/A

0.012700

0.5490

 

   79

    556

 

100.00% organelle/plastid



 

 
182

182

0.0100

0.0100

   78

1.05e-20

 

 

seqclust/clustering/clusters/dir_CL0182/CL182_tmb.png

N/A

0.012800

0.2380

 

   78

    193

 

1.28% Class_I/LINE:LINE-ENDO
1.28% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase



 

 
183

183

0.0100

0.0100

   77

2.74e-18

 

 

seqclust/clustering/clusters/dir_CL0183/CL183_tmb.png

N/A

0.051900

0.1670

 

   77

    203

 




 

 
184

184

0.0100

0.0100

   77

1.00e-20

 

 

seqclust/clustering/clusters/dir_CL0184/CL184_tmb.png

N/A

0.013000

0.4260

 

   77

    477

 




 

 
185

185

0.0100

0.0100

   76

2.39e-21

 

 

seqclust/clustering/clusters/dir_CL0185/CL185_tmb.png

N/A

0.013200

0.6520

 

   76

    282

 

97.37% organelle/plastid



 

 
186

186

0.0099

0.0099

   75

2.38e-18

 

 

seqclust/clustering/clusters/dir_CL0186/CL186_tmb.png

N/A

0.053300

0.4420

 

   75

    211

 




 

 
187

187

0.0099

0.0099

   75

9.59e-21

 

 

seqclust/clustering/clusters/dir_CL0187/CL187_tmb.png

N/A

0.013300

0.2100

 

   75

    311

 




 

 
188

188

0.0099

0.0099

   75

1.40e-21

 

 

seqclust/clustering/clusters/dir_CL0188/CL188_tmb.png

N/A

0.013300

0.7050

 

   75

    339

 

90.67% organelle/plastid
1.33% organelle/mitochondria