Cluster no. 30

Cluster no. 30

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Cluster is part of supercluster: 2

Cluster characteristics:

size	5996
size_real	5996
ecount	217599
supercluster	2
annotations_summary	0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
pair_completeness	0.658185840707965
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0181787858572382
satellite_probability	2.51712823533368e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2010
S9	2020
S7	1970

comparative analysis - number of edges between species:

	S8	S9	S7
S8	23800	24500	23500
S9	24500	25200	24400
S7	23500	24400	23600

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	1.000	0.995
S9	1.000	0.998	1.000
S7	0.995	1.000	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-INT Ale Ty1-INT 1 0.00017

Ale Ty1-PROT Ale Ty1-PROT 1 0.00017

Reina Ty3-INT Reina Ty3-INT 1 0.00017

clusters with similarity:

Cluster	Number of similarity hits

12	1910
14	1330
37	654
22	608
17	205
80	19
7	7
28	6
67	4
15	3
62	3
18	1
65	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

12	320	0.209
14	243	0.165
22	169	0.0835
37	141	0.115
17	73	0.049
62	23	0.0257
15	21	0.0125
80	19	0.0225
7	14	0.00953
28	12	0.0106
1	8	0.00241
67	5	0.00618
18	4	0.00251
23	4	0.00256
53	4	0.00435
13	3	0.00104
16	3	0.00114
21	3	0.00236
24	2	0.00111
36	2	0.00159
63	2	0.00169
65	2	0.00229
78	2	0.00244
92	2	0.00281
407	2	0.00319
4990	2	0.00323
5470	2	0.00323
9410	2	0.00323
10500	2	0.00323
3	1	0.000276
4	1	0.000325
9	1	0.00037
10	1	0.000681
20	1	4e-04
26	1	0.000423
31	1	0.000765
35	1	0.000645
39	1	0.000701
54	1	0.0011
71	1	0.00115
90	1	0.00131
178	1	0.0016
194	1	0.00158
335	1	0.0016
848	1	0.00161
967	1	0.0016
2090	1	0.00161
2260	1	0.00161
2520	1	0.00161
2740	1	0.00161
6280	1	0.00161
7340	1	0.00161
7380	1	0.00161
7440	1	0.00162
11100	1	0.00162
15800	1	0.00162
17000	1	0.00162
20800	1	0.00162
22000	1	0.00162
26100	1	0.00162

CL30 ----> CL12

No. of shared pairs: :320

CL30 ----> CL14

No. of shared pairs: :243

CL30 ----> CL22

No. of shared pairs: :169

CL30 ----> CL37

No. of shared pairs: :141

CL30 ----> CL17

No. of shared pairs: :73

CL30 ----> CL62

No. of shared pairs: :23

CL30 ----> CL15

No. of shared pairs: :21

CL30 ----> CL80

No. of shared pairs: :19

CL30 ----> CL7

No. of shared pairs: :14

CL30 ----> CL28

No. of shared pairs: :12