Cluster no. 91

Cluster no. 91

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Cluster is part of supercluster: 37

Cluster characteristics:

size	720
size_real	720
ecount	11042
supercluster	37
annotations_summary	0.14% Class_I/LINE:LINE-RT
pair_completeness	0.469387755102041
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00138888888888889
satellite_probability	3.54668226065428e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	233
S9	235
S7	252

comparative analysis - number of edges between species:

	S8	S9	S7
S8	1220	1150	1290
S9	1150	1140	1240
S7	1290	1240	1310

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	0.982	1.010
S9	0.982	1.010	1.010
S7	1.010	1.010	0.981

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-RT LINE LINE-RT 1 0.0014

clusters with similarity:

Cluster	Number of similarity hits

6	157
9	63
24	57
20	55
3	29
16	3
52	2
41	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

24	66	0.0504
9	23	0.0104
20	16	0.00796
16	12	0.00561
41	11	0.01
19	5	0.00248
13	4	0.00167
3	3	0.000955
4	2	0.000772
23	2	0.00186
5010	2	0.0152
7660	2	0.0153
13200	2	0.0153
16800	2	0.0153
17200	2	0.0153
19300	2	0.0153
23400	2	0.0153
1	1	0.000354
2	1	0.000477
12	1	0.000958
51	1	0.00252
52	1	0.000848
61	1	0.00159
63	1	0.00144
81	1	0.00151
1170	1	0.00749
1790	1	0.00758
2670	1	0.00755
2780	1	0.00755
3570	1	0.00758
3740	1	0.00763
4200	1	0.00758
5020	1	0.0076
6790	1	0.0076
9340	1	0.00763
11000	1	0.00763
24200	1	0.00763
25100	1	0.00763
25800	1	0.00763

CL91 ----> CL24

No. of shared pairs: :66

CL91 ----> CL9

No. of shared pairs: :23

CL91 ----> CL20

No. of shared pairs: :16

CL91 ----> CL16

No. of shared pairs: :12

CL91 ----> CL41

No. of shared pairs: :11