Cluster no. 7

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Cluster is part of supercluster: 2

Cluster characteristics:

size	9131
size_real	9131
ecount	449741
supercluster	2
annotations_summary	0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.01% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
pair_completeness	0.685619346501754
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0714051034935932
satellite_probability	3.1107067036829e-18
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3100
S9	3050
S7	2990

comparative analysis - number of edges between species:

	S8	S9	S7
S8	52700	50900	50000
S9	50900	49900	48800
S7	50000	48800	47800

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.010	0.996	0.998
S9	0.996	1.000	1.000
S7	0.998	1.000	1.000

protein domains:

Reads annotation summary

cl_string domain Freq proportion

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.00011

chromo-unclass Ty3-INT chromo-unclass Ty3-INT 1 0.00011

Reina Ty3-RT Reina Ty3-RT 4 0.00044

clusters with similarity:

Cluster	Number of similarity hits

39	8040
1	1150
87	638
89	253
75	201
67	111
17	108
14	98
28	39
15	11
30	7
71	2
37	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

39	628	0.378
1	349	0.0983
75	171	0.154
87	130	0.132
89	73	0.0787
67	25	0.024
15	20	0.0105
17	18	0.0105
28	17	0.0125
30	14	0.00953
343	14	0.0163
23	12	0.00669
71	11	0.00996
37	7	0.00479
2	5	0.00177
13	4	0.00128
14	4	0.00234
16	4	0.0014
12	3	0.0017
3040	3	0.00351
18	2	0.00109
19	2	0.000731
22	2	0.000886
40	2	0.00143
53	2	0.00174
63	2	0.00141
92	2	0.00212
4590	2	0.00234
19700	2	0.00235
25500	2	0.00235
3	1	0.000259
4	1	0.000302
6	1	0.000296
9	1	0.00034
10	1	0.000588
11	1	0.000366
24	1	0.000492
26	1	0.000385
29	1	0.000475
31	1	0.000649
34	1	0.000883
41	1	0.00055
43	1	0.000657
55	1	0.000897
57	1	0.00115
60	1	0.000854
76	1	0.000926
81	1	0.000722
99	1	0.00113
106	1	0.00115
153	1	0.00113
282	1	0.00116
355	1	0.00117
542	1	0.00116
594	1	0.00116
856	1	0.00117
3550	1	0.00117
4170	1	0.00117
6020	1	0.00117
6600	1	0.00117
10100	1	0.00117
17600	1	0.00117
22000	1	0.00117