Cluster no. 150

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Cluster is part of supercluster: 94

Cluster characteristics:

size 118
size_real 118
ecount 1029
supercluster 94
annotations_summary 0.85% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness 0.123809523809524
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00847457627118644
satellite_probability 6.16948676651695e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 41
S9 39
S7 38
comparative analysis - number of edges between species:
S8 S9 S7
S8 107 112 109
S9 112 133 118
S7 109 118 110
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.020 0.969 1.010
S9 0.969 1.040 0.991
S7 1.010 0.991 0.997

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-RH Tekay Ty3-RH 1 0.0085

clusters with similarity:

Cluster Number of similarity hits
3 144
6 59
5 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
6 41 0.016
3 32 0.0105
16 3 0.00146
5 2 0.000741
1 1 0.000364
9 1 0.000469
29 1 0.00077

CL150 ----> CL6

image

No. of shared pairs: :41

CL150 ----> CL3

image

No. of shared pairs: :32