Cluster no. 43

Cluster no. 43

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Cluster is part of supercluster: 1

Cluster characteristics:

size	4069
size_real	4069
ecount	386644
supercluster	1
annotations_summary	0.17% organelle/plastid 0.05% Class_I/LTR/Ty1_copia/Angela:Ty1-INT 0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness	0.50369549150037
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.399606782993364
satellite_probability	6.03814360691578e-07
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1320
S9	1360
S7	1390

comparative analysis - number of edges between species:

	S8	S9	S7
S8	42300	42300	43300
S9	42300	42300	43200
S7	43300	43200	44300

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	0.999	1.000
S9	0.999	1.000	0.999
S7	1.000	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 7 0.00172

Angela Ty1-INT Angela Ty1-INT 2 0.00049

Ale Ty1-RT Ale Ty1-RT 2 0.00049

clusters with similarity:

Cluster	Number of similarity hits

6	7640
27	3750
52	3310
31	964
41	179
68	164
19	12

clusters connected through mates:

Cluster	Number of shared read pairs	k

6	446	0.14
31	234	0.172
27	205	0.0965
52	105	0.061
5	76	0.0229
68	57	0.0633
19	26	0.0102
41	20	0.0122
24	4	0.00216
63	4	0.00324
1150	4	0.00593
59	3	0.00211
5460	3	0.00446
1	2	0.000593
11	2	0.000784
13	2	0.000682
67	2	0.00232
92	2	0.00262
5440	2	0.00297
2	1	0.000379
7	1	0.000657
12	1	0.000631
20	1	0.000392
28	1	0.000845
35	1	0.000624
37	1	0.00078
49	1	0.000685
50	1	0.00111
53	1	0.00103
55	1	0.00107
56	1	0.000759
60	1	0.00101
87	1	0.00124
287	1	0.00147
996	1	0.00148
2350	1	0.00148
8690	1	0.00149
13500	1	0.00149
16600	1	0.00149

CL43 ----> CL6

No. of shared pairs: :446

CL43 ----> CL31

No. of shared pairs: :234

CL43 ----> CL27

No. of shared pairs: :205

CL43 ----> CL52

No. of shared pairs: :105

CL43 ----> CL5

No. of shared pairs: :76

CL43 ----> CL68

No. of shared pairs: :57

CL43 ----> CL19

No. of shared pairs: :26

CL43 ----> CL41

No. of shared pairs: :20