Cluster no. 39

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Cluster is part of supercluster: 2

Cluster characteristics:

size	4515
size_real	4515
ecount	463066
supercluster	2
annotations_summary	0.66% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy:Ty3-RH 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT 0.02% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness	0.472602739726027
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0128460686600221
satellite_probability	8.64741555314371e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1480
S9	1520
S7	1520

comparative analysis - number of edges between species:

	S8	S9	S7
S8	48300	51200	50100
S9	51200	54300	53200
S7	50100	53200	51600

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	0.999	1.000
S9	0.999	0.998	1.000
S7	1.000	1.000	0.996

protein domains:

Reads annotation summary

cl_string domain Freq proportion

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 30 0.00664

Gymco-II Ty1-INT Gymco-II Ty1-INT 1 0.00022

Reina Ty3-INT Reina Ty3-INT 1 0.00022

Phygy Ty3-RH Phygy Ty3-RH 2 0.00044

Athila Ty3-RT Athila Ty3-RT 1 0.00022

clusters with similarity:

Cluster	Number of similarity hits

7	8040
23	4760
67	37
17	10
12	7
28	4
127	2
10	1
15	1
75	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

23	717	0.409
7	628	0.378
127	21	0.0246
28	19	0.0144
67	18	0.018
17	15	0.00893
12	11	0.00639
1	8	0.00228
18	6	0.00336
2	5	0.0018
15	5	0.00267
37	5	0.00352
1170	5	0.00616
16	4	0.00142
5890	3	0.0037
4	2	0.000612
10	2	0.00121
21	2	0.00137
22	2	0.000903
29	2	0.000971
36	2	0.00138
1810	2	0.00246
7520	2	0.00247
22300	2	0.00247
3	1	0.000262
13	1	0.000326
24	1	0.000503
30	1	0.000701
34	1	0.000917
41	1	0.000564
53	1	0.000901
63	1	0.000728
70	1	0.000903
75	1	0.000938
80	1	0.000966
159	1	0.00118
1560	1	0.00123
2030	1	0.00124
4570	1	0.00123
5170	1	0.00123
6780	1	0.00124
15300	1	0.00124
15400	1	0.00124
17600	1	0.00124
23600	1	0.00124