Cluster no. 64

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Cluster is part of supercluster: 18

Cluster characteristics:

size 1909
size_real 1909
ecount 12808
supercluster 18
annotations_summary 20.69% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
11.37% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
3.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.05% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
pair_completeness 0.486760124610592
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000523834468308015
satellite_probability 2.89707838193454e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 617
S9 634
S7 658
comparative analysis - number of edges between species:
S8 S9 S7
S8 1520 1360 1480
S9 1360 1290 1400
S7 1480 1400 1520
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.020 0.985 0.99
S9 0.985 1.010 1.01
S7 0.990 1.010 1.00

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tork Ty1-INT Tork Ty1-INT 1 0.00052
Tekay Ty3-CHDII Tekay Ty3-CHDII 70 0.03667
Reina Ty3-INT Reina Ty3-INT 2 0.00105
Tekay Ty3-INT Tekay Ty3-INT 395 0.20691
Tekay Ty3-RH Tekay Ty3-RH 217 0.11367

clusters with similarity:

Cluster Number of similarity hits
44 32
33 24

clusters connected through mates:

Cluster Number of shared
read pairs		 k
33 34 0.0463
16 8 0.00342
1 5 0.00165
73 4 0.00656
15 3 0.00216
2410 3 0.00904
4640 3 0.00906
2 2 0.000871
12 2 0.00161
13 2 0.000772
18 2 0.00153
22 2 0.00115
29 2 0.00126
36 2 0.00206
50 2 0.0036
60 2 0.00308
159 2 0.00548
2650 2 0.00604
4870 2 0.00604
6530 2 0.00604
12100 2 0.00605
12700 2 0.00605
14800 2 0.00605
17500 2 0.00605
18000 2 0.00605
18500 2 0.00605
19000 2 0.00605
23300 2 0.00605
8 1 0.000555
21 1 0.00102
23 1 0.000786
24 1 0.000663
44 1 0.00154
57 1 0.00288
66 1 0.00168
115 1 0.0027
154 1 0.0027
194 1 0.0029
288 1 0.00293
612 1 0.00299
641 1 0.00298
857 1 0.003
1410 1 0.00301
2300 1 0.00301
3300 1 0.00302
3960 1 0.00302
4600 1 0.00303
4640 1 0.00303
4770 1 0.00302
4870 1 0.00302
5830 1 0.00302
6420 1 0.00303
7420 1 0.00303
8190 1 0.00303
8330 1 0.00303
8920 1 0.00303
9280 1 0.00303
9890 1 0.00303
10200 1 0.00303
11200 1 0.00303
11400 1 0.00303
12900 1 0.00303
13200 1 0.00303
13400 1 0.00303
13500 1 0.00303
13800 1 0.00303
14700 1 0.00303
15900 1 0.00303
16800 1 0.00303
16900 1 0.00303
17800 1 0.00303
18800 1 0.00303
20200 1 0.00303
21300 1 0.00303
22500 1 0.00303
24800 1 0.00303

CL64 ----> CL33

image

No. of shared pairs: :34