Cluster no. 149

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Cluster is part of supercluster: 93

Cluster characteristics:

size 118
size_real 118
ecount 308
supercluster 93
annotations_summary 31.36% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
pair_completeness 0.573333333333333
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00847457627118644
satellite_probability 4.79804177716536e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 33
S9 59
S7 26
comparative analysis - number of edges between species:
S8 S9 S7
S8 19 41.0 21.0
S9 41 78.0 35.5
S7 21 35.5 16.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.892 1.010 1.100
S9 1.010 1.010 0.976
S7 1.100 0.976 0.938

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tork Ty1-GAG Tork Ty1-GAG 37 0.31

clusters connected through mates:

Cluster Number of shared
read pairs		 k
255 4 0.129
1960 4 0.211
863 3 0.15
22 1 0.000703
5130 1 0.0606
22100 1 0.0588