Cluster no. 78

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Cluster is part of supercluster: 28

Cluster characteristics:

size 1304
size_real 1304
ecount 8450
supercluster 28
annotations_summary 0.08% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
pair_completeness 0.525146198830409
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000766871165644172
satellite_probability 1.86264069827155e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 442
S9 478
S7 384
comparative analysis - number of edges between species:
S8 S9 S7
S8 957 1060 838
S9 1060 1150 913
S7 838 913 724
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.993 1.000 1.000
S9 1.000 0.997 0.999
S7 1.000 0.999 0.998

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tork Ty1-RT Tork Ty1-RT 1 0.00077

clusters with similarity:

Cluster Number of similarity hits
29 3
79 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
244 9 0.041
13 7 0.00284
29 5 0.00344
79 5 0.0127
131 5 0.0208
676 5 0.0238
1010 4 0.0192
16 3 0.00136
599 3 0.0144
1250 3 0.0145
2030 3 0.0146
6420 3 0.0147
1 2 0.000689
2 2 0.000922
8 2 0.00119
12 2 0.00179
23 2 0.00174
30 2 0.00244
63 2 0.00261
267 2 0.00913
1100 2 0.00978
1440 2 0.00973
2520 2 0.00973
4080 2 0.00976
4800 2 0.00978
6040 2 0.00978
6490 2 0.00978
6530 2 0.00978
7200 2 0.00978
7800 2 0.0098
10600 2 0.0098
10600 2 0.0098
18000 2 0.0098
20900 2 0.0098
21300 2 0.0098
25800 2 0.0098
11 1 0.00048
15 1 0.000791
20 1 0.00048
22 1 0.000621
24 1 0.000723
26 1 0.000513
32 1 0.000584
34 1 0.00206
37 1 0.00123
49 1 0.00101
59 1 0.00105
61 1 0.00143
75 1 0.00217
90 1 0.00288
107 1 0.00353
159 1 0.00419
529 1 0.0048
663 1 0.00481
1140 1 0.00482
1260 1 0.00483
1270 1 0.00485
1350 1 0.00485
1670 1 0.00484
1910 1 0.00488
2000 1 0.00485
2020 1 0.0049
2210 1 0.00487
2810 1 0.00487
2890 1 0.0049
3490 1 0.00488
3720 1 0.00488
3990 1 0.0049
4490 1 0.00491
4720 1 0.00491
4870 1 0.00491
4980 1 0.00489
5220 1 0.00491
5410 1 0.00489
5480 1 0.00491
5860 1 0.00489
6220 1 0.00489
6430 1 0.00491
6880 1 0.00489
6960 1 0.00491
7020 1 0.00491
7130 1 0.00489
7590 1 0.0049
8340 1 0.0049
8520 1 0.0049
9370 1 0.0049
9880 1 0.0049
10900 1 0.0049
11100 1 0.0049
11300 1 0.0049
12900 1 0.0049
13600 1 0.0049
15100 1 0.0049
15500 1 0.0049
17900 1 0.0049
18400 1 0.0049
18700 1 0.0049
19300 1 0.0049
19500 1 0.0049
20300 1 0.0049
20500 1 0.0049
21300 1 0.0049
21300 1 0.0049
22600 1 0.0049
22700 1 0.0049
22800 1 0.0049
23000 1 0.0049
23800 1 0.0049
25400 1 0.0049
25400 1 0.0049