Cluster no. 63

Cluster no. 63

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Cluster is part of supercluster: 1

Cluster characteristics:

size	1957
size_real	1957
ecount	155142
supercluster	1
annotations_summary	1.43% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 1.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness	0.268308489954634
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.166581502299438
satellite_probability	2.19980777031452e-13
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	669
S9	622
S7	666

comparative analysis - number of edges between species:

	S8	S9	S7
S8	18700	17600	17600
S9	17600	16700	16500
S7	17600	16500	16400

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	0.999	1.000
S9	0.999	1.000	0.999
S7	1.000	0.999	0.998

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 21 0.01073

Reina Ty3-INT Reina Ty3-INT 1 0.00051

Tekay Ty3-INT Tekay Ty3-INT 28 0.01431

Tekay Ty3-RH Tekay Ty3-RH 1 0.00051

Tekay Ty3-RT Tekay Ty3-RT 1 0.00051

clusters with similarity:

Cluster	Number of similarity hits

4	15300
13	4930
25	333
24	1
29	1
59	1
126	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

4	350	0.116
59	165	0.126
13	126	0.0446
25	91	0.0934
68	14	0.0176
2	13	0.00514
3	10	0.0028
6	9	0.00292
24	9	0.00516
5	8	0.00249
19	7	0.00286
41	7	0.00458
27	6	0.00297
29	6	0.0033
1	4	0.00123
11	4	0.00164
22	4	0.00203
43	4	0.00324
9	3	0.00113
10	3	0.00212
16	3	0.00117
20	3	0.00123
23	3	0.00199
26	3	0.0013
79	3	0.00398
7	2	0.00141
8	2	0.000982
15	2	0.00123
30	2	0.00169
32	2	0.000965
36	2	0.00166
66	2	0.00241
71	2	0.00245
73	2	0.00237
78	2	0.00261
24400	2	0.00354
12	1	0.000676
14	1	0.000704
18	1	0.000649
21	1	0.000822
28	1	0.000929
31	1	0.000797
33	1	0.00103
35	1	0.000668
37	1	0.000851
38	1	0.000703
39	1	0.000728
42	1	0.00113
44	1	0.00113
49	1	0.000739
52	1	0.00062
54	1	0.00116
61	1	0.000941
69	1	0.00132
76	1	0.00126
80	1	0.00126
83	1	0.00114
90	1	0.00141
91	1	0.00144
92	1	0.00152
109	1	0.00171
134	1	0.00162
214	1	0.00174
265	1	0.00175
287	1	0.00174
505	1	0.00174
596	1	0.00176
802	1	0.00176
1050	1	0.00176
1820	1	0.00177
2150	1	0.00176
4280	1	0.00177
4470	1	0.00177
9300	1	0.00177
9440	1	0.00177
11800	1	0.00177
13900	1	0.00177
21800	1	0.00177

CL63 ----> CL4

No. of shared pairs: :350

CL63 ----> CL59

No. of shared pairs: :165

CL63 ----> CL13

No. of shared pairs: :126

CL63 ----> CL25

No. of shared pairs: :91

CL63 ----> CL68

No. of shared pairs: :14

CL63 ----> CL2

No. of shared pairs: :13

CL63 ----> CL3

No. of shared pairs: :10