Cluster no. 6

Cluster no. 6

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Cluster is part of supercluster: 1

Cluster characteristics:

size	9199
size_real	9199
ecount	3227486
supercluster	1
annotations_summary	0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-RH 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness	0.291631564167369
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0145668007392108
satellite_probability	1.1552035631474e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3100
S9	3110
S7	2990

comparative analysis - number of edges between species:

	S8	S9	S7
S8	369000	374000	349000
S9	374000	378000	353000
S7	349000	353000	330000

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	1.000	1
S9	1.000	0.998	1
S7	1.000	1.000	1

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-INT Ale Ty1-INT 1 0.00011

Tork Ty1-RH Tork Ty1-RH 1 0.00011

CRM Ty3-CHDII CRM Ty3-CHDII 4 0.00043

Tekay Ty3-INT Tekay Ty3-INT 1 0.00011

clusters with similarity:

Cluster	Number of similarity hits

5	117000
52	64200
19	39700
43	7640
41	1060
91	157
150	59
79	24
1	1
20	1
22	1
23	1
387	1
864	1
1180	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

5	2010	0.389
19	1190	0.271
52	547	0.153
43	446	0.14
41	160	0.0459
3	94	0.017
150	41	0.016
20	27	0.00613
13	17	0.00355
1	15	0.00287
79	15	0.00553
16	13	0.00287
22	12	0.00305
24	11	0.00297
21	10	0.00315
23	9	0.0026
63	9	0.00292
387	9	0.00355
9	8	0.00174
29	8	0.00212
207	8	0.00315
12	6	0.00175
4	4	0.000803
61	4	0.00132
2	3	0.000668
11	3	0.000682
89	3	0.00115
507	3	0.00119
14	2	0.000592
17	2	0.000589
36	2	0.000632
40	2	0.000652
537	2	0.00079
660	2	0.000792
7	1	0.000296
8	1	0.00025
15	1	0.000279
18	1	0.000286
25	1	0.000341
27	1	0.000252
28	1	0.00033
32	1	0.000248
34	1	0.000357
37	1	0.000319
38	1	0.000296
42	1	0.000351
48	1	0.000296
53	1	0.000354
55	1	0.000359
56	1	0.000316
65	1	0.00036
66	1	0.000359
69	1	0.000368
70	1	0.000354
71	1	0.00036
73	1	0.000357
80	1	0.000364
83	1	0.000353
428	1	0.000395
469	1	0.000396
739	1	0.000395
864	1	0.000396
967	1	0.000396
1050	1	0.000396
1150	1	0.000396
1850	1	0.000396
1950	1	0.000396
1970	1	0.000396
3250	1	0.000396
3370	1	0.000396
3680	1	0.000396
4790	1	0.000396
5340	1	0.000396
5660	1	0.000396
5860	1	0.000396
5900	1	0.000396
7500	1	0.000396
11000	1	0.000396
11400	1	0.000396
12400	1	0.000396
16600	1	0.000396
17100	1	0.000396
20400	1	0.000396
21400	1	0.000396
23400	1	0.000396
24500	1	0.000396

CL6 ----> CL5

No. of shared pairs: :2014

CL6 ----> CL19

No. of shared pairs: :1193

CL6 ----> CL52

No. of shared pairs: :547

CL6 ----> CL43

No. of shared pairs: :446

CL6 ----> CL41

No. of shared pairs: :160

CL6 ----> CL3

No. of shared pairs: :94

CL6 ----> CL150

No. of shared pairs: :41

CL6 ----> CL20

No. of shared pairs: :27

CL6 ----> CL13

No. of shared pairs: :17

CL6 ----> CL1

No. of shared pairs: :15

CL6 ----> CL79

No. of shared pairs: :15

CL6 ----> CL16

No. of shared pairs: :13

CL6 ----> CL22

No. of shared pairs: :12

CL6 ----> CL24

No. of shared pairs: :11

CL6 ----> CL21

No. of shared pairs: :10