Cluster no. 82

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Cluster is part of supercluster: 30

Cluster characteristics:

size	1129
size_real	1129
ecount	9738
supercluster	30
annotations_summary	18.51% Class_I/LTR/Ty1_copia/TAR:Ty1-RT 11.60% Class_I/LTR/Ty1_copia/TAR:Ty1-INT 10.36% Class_I/LTR/Ty1_copia/TAR:Ty1-RH 5.76% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT 2.92% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG 0.44% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT 0.09% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
pair_completeness	0.766823161189358
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000885739592559787
satellite_probability	4.71413703996316e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	380
S9	374
S7	375

comparative analysis - number of edges between species:

	S8	S9	S7
S8	1080	1080	1110
S9	1080	1090	1060
S7	1110	1060	1080

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.984	0.997	1.020
S9	0.997	1.010	0.988
S7	1.020	0.988	0.994

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TAR Ty1-GAG TAR Ty1-GAG 33 0.02923

Ivana Ty1-INT Ivana Ty1-INT 1 0.00089

TAR Ty1-INT TAR Ty1-INT 131 0.11603

TAR Ty1-PROT TAR Ty1-PROT 65 0.05757

TAR Ty1-RH TAR Ty1-RH 117 0.10363

SIRE Ty1-RT SIRE Ty1-RT 5 0.00443

TAR Ty1-RT TAR Ty1-RT 209 0.18512

clusters connected through mates:

Cluster	Number of shared read pairs	k

145	29	0.254
852	7	0.0881
4200	4	0.0523
1670	2	0.026
11300	2	0.0265
19200	2	0.0265
13	1	0.000428
18	1	0.000951
24	1	0.000797
33	1	0.00208
36	1	0.00139
51	1	0.00293
53	1	0.00266
708	1	0.0127
822	1	0.0126
854	1	0.0124
2710	1	0.0132
2970	1	0.0132
5660	1	0.0132
9680	1	0.0132
11100	1	0.0132
18100	1	0.0132
22900	1	0.0132

CL82 ----> CL145

No. of shared pairs: :29