Cluster no. 168

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Cluster is part of supercluster: 112

Cluster characteristics:

size 90
size_real 90
ecount 222
supercluster 112
annotations_summary 63.33% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
1.11% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
pair_completeness 0.25
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0111111111111111
satellite_probability 1.07807224686137e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 22
S9 41
S7 27
comparative analysis - number of edges between species:
S8 S9 S7
S8 16.0 26.5 16.5
S9 26.5 45.0 29.0
S7 16.5 29.0 17.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.020 0.992 0.993
S9 0.992 0.989 1.020
S7 0.993 1.020 0.966

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-INT Angela Ty1-INT 57 0.633
TAR Ty1-INT TAR Ty1-INT 1 0.011

clusters connected through mates:

Cluster Number of shared
read pairs		 k
144 11 0.204
95 4 0.0385
2740 3 0.102
2580 2 0.0678
6680 2 0.0702
11500 2 0.0714
20200 2 0.0714
5600 1 0.0351
13100 1 0.0357
15600 1 0.0357

CL168 ----> CL144

image

No. of shared pairs: :11