Cluster no. 87

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Cluster is part of supercluster: 2

Cluster characteristics:

size 924
size_real 924
ecount 27827
supercluster 2
annotations_summary
pair_completeness 0.542570951585977
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.128787878787879
satellite_probability 7.40724439817254e-15
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 341
S9 277
S7 306
comparative analysis - number of edges between species:
S8 S9 S7
S8 4040 3180 3410
S9 3180 2490 2620
S7 3410 2620 2870
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.995 1.000 1.000
S9 1.000 1.010 0.987
S7 1.000 0.987 1.010

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
7 638
1 304
65 12
89 4
28 1
29 1
67 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
7 130 0.132
1 111 0.0391
65 4 0.0102
17 2 0.00199
4570 2 0.0144
12 1 0.000951
24 1 0.00076
27 1 0.000629
28 1 0.00154
29 1 0.00072
36 1 0.00128
38 1 0.00101
43 1 0.00124
75 1 0.00253
76 1 0.00274

CL87 ----> CL7

image

No. of shared pairs: :130

CL87 ----> CL1

image

No. of shared pairs: :111