Cluster no. 8

Cluster no. 8

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Cluster is part of supercluster: 3

Cluster characteristics:

size	9055
size_real	9055
ecount	417277
supercluster	3
annotations_summary	0.08% organelle/plastid 0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-INT 0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-PROT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness	0.509166666666667
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00165654334621756
satellite_probability	2.33736515693784e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3070
S9	3090
S7	2900

comparative analysis - number of edges between species:

	S8	S9	S7
S8	46600	48100	44600
S9	48100	50000	46200
S7	44600	46200	42800

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	0.998	0.999
S9	0.998	1.000	1.000
S7	0.999	1.000	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 7 0.00077

Tork Ty1-INT Tork Ty1-INT 2 0.00022

SIRE Ty1-RH SIRE Ty1-RH 1 0.00011

Ale Ty1-RT Ale Ty1-RT 4 0.00044

Reina Ty3-GAG Reina Ty3-GAG 1 0.00011

Athila Ty3-INT Athila Ty3-INT 1 0.00011

TatV Ty3-INT TatV Ty3-INT 1 0.00011

Galadriel Ty3-PROT Galadriel Ty3-PROT 1 0.00011

chromo-unclass Ty3-RT chromo-unclass Ty3-RT 1 0.00011

clusters with similarity:

Cluster	Number of similarity hits

2	7960
27	1210
35	1110
52	480
18	305
29	120
61	67
38	13
147	8
74	7
13	1
89	1
236	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

2	1000	0.292
35	567	0.236
27	249	0.0851
18	88	0.0359
38	59	0.0253
147	39	0.0258
29	32	0.0117
74	30	0.0166
142	24	0.0159
13	18	0.00482
16	18	0.00517
1	13	0.00312
24	12	0.00452
52	12	0.00476
61	11	0.00558
12	8	0.00335
22	8	0.00278
40	7	0.00347
36	6	0.00284
23	5	0.00207
9	3	0.000843
53	3	0.00169
1230	3	0.00203
1930	3	0.00203
4	2	0.000508
10	2	0.000861
19	2	0.000596
21	2	0.000941
28	2	0.00101
32	2	0.000671
42	2	0.00111
48	2	0.000861
59	2	9e-04
60	2	0.00112
63	2	0.000982
78	2	0.00119
126	2	0.00132
1280	2	0.00135
1700	2	0.00136
2070	2	0.00136
2870	2	0.00136
3850	2	0.00136
4090	2	0.00136
5420	2	0.00136
6220	2	0.00136
7980	2	0.00136
9460	2	0.00136
15800	2	0.00136
21600	2	0.00136
22200	2	0.00136
24400	2	0.00136
5	1	0.000242
6	1	0.00025
11	1	0.000298
25	1	0.000531
26	1	0.000311
34	1	0.00057
45	1	0.000573
49	1	0.000442
50	1	0.000589
64	1	0.000555
70	1	0.000564
73	1	0.000571
89	1	0.000646
92	1	0.000639
129	1	0.000655
169	1	0.000671
229	1	0.000671
236	1	0.000673
861	1	0.000677
967	1	0.000677
1150	1	0.000678
1250	1	0.000678
1350	1	0.000678
1410	1	0.000678
1800	1	0.000678
1870	1	0.000678
2250	1	0.000678
2500	1	0.000678
2960	1	0.000678
2980	1	0.000679
3360	1	0.000679
3670	1	0.000678
3890	1	0.000679
4150	1	0.000678
4370	1	0.000678
4400	1	0.000679
4980	1	0.000679
5080	1	0.000678
5970	1	0.000678
6540	1	0.000679
8330	1	0.000679
8550	1	0.000679
9240	1	0.000679
9710	1	0.000679
10400	1	0.000679
10500	1	0.000679
10700	1	0.000679
11500	1	0.000679
11800	1	0.000679
13400	1	0.000679
13700	1	0.000679
14000	1	0.000679
14400	1	0.000679
14900	1	0.000679
14900	1	0.000679
15200	1	0.000679
15500	1	0.000679
17300	1	0.000679
18500	1	0.000679
18600	1	0.000679
19200	1	0.000679
19700	1	0.000679
20200	1	0.000679
20600	1	0.000679
20800	1	0.000679
21400	1	0.000679
22500	1	0.000679
22900	1	0.000679
23700	1	0.000679
24200	1	0.000679
24500	1	0.000679
25600	1	0.000679
25700	1	0.000679

CL8 ----> CL2

No. of shared pairs: :1005

CL8 ----> CL35

No. of shared pairs: :567

CL8 ----> CL27

No. of shared pairs: :249

CL8 ----> CL18

No. of shared pairs: :88

CL8 ----> CL38

No. of shared pairs: :59

CL8 ----> CL147

No. of shared pairs: :39

CL8 ----> CL29

No. of shared pairs: :32

CL8 ----> CL74

No. of shared pairs: :30

CL8 ----> CL142

No. of shared pairs: :24

CL8 ----> CL13

No. of shared pairs: :18

CL8 ----> CL16

No. of shared pairs: :18

CL8 ----> CL1

No. of shared pairs: :13

CL8 ----> CL24

No. of shared pairs: :12

CL8 ----> CL52

No. of shared pairs: :12

CL8 ----> CL61

No. of shared pairs: :11