Cluster no. 137

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Cluster is part of supercluster: 82

Cluster characteristics:

size 146
size_real 146
ecount 999
supercluster 82
annotations_summary 100.00% organelle/plastid
pair_completeness 0.67816091954023
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00684931506849315
satellite_probability 1.74710246978928e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 31
S9 51
S7 64
comparative analysis - number of edges between species:
S8 S9 S7
S8 48.0 75 92.5
S9 75.0 111 160.0
S7 92.5 160 186.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.030 1.010 0.979
S9 1.010 0.929 1.050
S7 0.979 1.050 0.969

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 146 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
110 9 0.327
108 7 0.233
96 1 0.0299
271 1 0.0476
1330 1 0.0556
9960 1 0.0667