Cluster no. 92

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Cluster is part of supercluster: 38

Cluster characteristics:

size 659
size_real 659
ecount 4113
supercluster 38
annotations_summary 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.15% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.561611374407583
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00151745068285281
satellite_probability 1.29477276776204e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 218
S9 223
S7 218
comparative analysis - number of edges between species:
S8 S9 S7
S8 380 449 457
S9 449 484 484
S7 457 484 468
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.945 1.010 1.040
S9 1.010 0.991 0.997
S7 1.040 0.997 0.969

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-RT SIRE Ty1-RT 1 0.0015
Tekay Ty3-GAG Tekay Ty3-GAG 1 0.0015
TatV Ty3-INT TatV Ty3-INT 1 0.0015
Tekay Ty3-INT Tekay Ty3-INT 1 0.0015

clusters with similarity:

Cluster Number of similarity hits
47 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
47 28 0.0986
3 5 0.00161
28 4 0.00662
951 4 0.0408
1000 4 0.0415
12 3 0.00298
2430 3 0.0316
7 2 0.00212
10 2 0.00212
17 2 0.00208
30 2 0.00281
35 2 0.00195
43 2 0.00262
45 2 0.00549
58 2 0.0107
707 2 0.0204
3760 2 0.0212
9090 2 0.0214
20000 2 0.0214
25400 2 0.0214
1 1 0.000358
4 1 0.000392
8 1 0.000639
20 1 0.000507
21 1 0.00134
22 1 0.000667
23 1 0.000965
24 1 0.000786
32 1 0.000625
33 1 0.00201
36 1 0.00136
37 1 0.00142
41 1 0.000945
44 1 0.00242
48 1 0.00106
49 1 0.00114
53 1 0.00254
63 1 0.00152
80 1 0.00313
99 1 0.00775
294 1 0.00971
365 1 0.00976
687 1 0.0103
849 1 0.0104
1170 1 0.0104
1240 1 0.0104
1410 1 0.0105
1940 1 0.0105
2500 1 0.0105
3580 1 0.0106
3880 1 0.0106
5270 1 0.0106
6060 1 0.0106
13700 1 0.0107
15100 1 0.0107
16900 1 0.0107
18500 1 0.0107
21300 1 0.0107

CL92 ----> CL47

image

No. of shared pairs: :28