Cluster no. 170

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Cluster is part of supercluster: 114

Cluster characteristics:

size 89
size_real 89
ecount 179
supercluster 114
annotations_summary 98.88% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.348484848484849
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0112359550561798
satellite_probability 1.17007913038788e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 25
S9 25
S7 39
comparative analysis - number of edges between species:
S8 S9 S7
S8 13.0 12.5 20.5
S9 12.5 18.0 25.5
S7 20.5 25.5 31.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.100 0.869 1.040
S9 0.869 1.030 1.060
S7 1.040 1.060 0.936

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-RT SIRE Ty1-RT 88 0.99

clusters connected through mates:

Cluster Number of shared
read pairs		 k
138 18 0.36
115 11 0.175
9210 2 0.0889
6170 1 0.0435

CL170 ----> CL138

image

No. of shared pairs: :18

CL170 ----> CL115

image

No. of shared pairs: :11