Cluster no. 181

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Cluster is part of supercluster: 125

Cluster characteristics:

size 79
size_real 79
ecount 556
supercluster 125
annotations_summary 100.00% organelle/plastid
pair_completeness 0.549019607843137
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0126582278481013
satellite_probability 5.53369227532392e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 23
S9 30
S7 26
comparative analysis - number of edges between species:
S8 S9 S7
S8 50.0 61.5 58
S9 61.5 71.0 69
S7 58.0 69.0 58
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.968 1.000 1.030
S9 1.000 0.972 1.030
S7 1.030 1.030 0.942

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 79 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
106 12 0.453
108 5 0.182
32 1 0.000658
185 1 0.0513

CL181 ----> CL106

image

No. of shared pairs: :12