Cluster no. 70

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Cluster is part of supercluster: 22

Cluster characteristics:

size 1649
size_real 1649
ecount 10143
supercluster 22
annotations_summary 0.85% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG
0.49% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.06% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
pair_completeness 0.467081850533808
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000606428138265616
satellite_probability 3.54668226065428e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 548
S9 530
S7 571
comparative analysis - number of edges between species:
S8 S9 S7
S8 1020 1060 1090
S9 1060 1170 1200
S7 1090 1200 1260
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.030 0.989 0.984
S9 0.989 1.010 1.000
S7 0.984 1.000 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-GAG SIRE Ty1-GAG 8 0.00485
TAR Ty1-GAG TAR Ty1-GAG 14 0.00849
Tork Ty1-GAG Tork Ty1-GAG 1 0.00061
CRM Ty3-RT CRM Ty3-RT 1 0.00061

clusters with similarity:

Cluster Number of similarity hits
24 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
60 18 0.0291
331 14 0.0447
208 8 0.0254
638 8 0.0262
1090 6 0.0197
1220 5 0.0166
1390 4 0.0132
2150 4 0.0132
2760 4 0.0132
10 3 0.00261
24 3 0.00203
1470 3 0.0099
2420 3 0.00993
2850 3 0.00997
3720 3 0.00995
3920 3 0.00995
5140 3 0.00997
5940 3 0.00997
1 2 0.000667
9 2 0.000838
25 2 0.00282
27 2 0.00114
841 2 0.00659
1400 2 0.00663
1430 2 0.00664
2280 2 0.00662
2570 2 0.00664
3080 2 0.00663
3400 2 0.00663
3580 2 0.00663
4040 2 0.00663
4330 2 0.00664
4460 2 0.00664
4700 2 0.00664
4940 2 0.00664
5410 2 0.00664
5680 2 0.00664
5700 2 0.00664
6460 2 0.00664
6750 2 0.00664
7220 2 0.00664
7920 2 0.00666
8660 2 0.00666
8960 2 0.00666
13100 2 0.00666
13800 2 0.00666
14100 2 0.00666
14400 2 0.00666
15700 2 0.00666
15800 2 0.00666
17100 2 0.00666
17500 2 0.00666
19000 2 0.00666
19900 2 0.00666
22100 2 0.00666
22200 2 0.00666
22400 2 0.00666
23200 2 0.00666
2 1 0.000442
5 1 0.000339
6 1 0.000354
8 1 0.000564
12 1 0.000824
15 1 0.000735
16 1 0.000433
17 1 0.000855
23 1 0.000805
28 1 0.00123
29 1 0.000645
33 1 0.00142
37 1 0.0011
39 1 0.000903
41 1 0.000791
44 1 0.00161
47 1 0.00204
53 1 0.00167
55 1 0.00178
67 1 0.00204
69 1 0.00202
73 1 0.00173
76 1 0.0019
84 1 0.00189
86 1 0.00202
88 1 0.00277
128 1 0.00292
276 1 0.00325
409 1 0.00323
1210 1 0.00331
1390 1 0.00331
1460 1 0.00332
1780 1 0.00331
2140 1 0.00331
3010 1 0.00333
3330 1 0.00333
3340 1 0.00332
3590 1 0.00332
3650 1 0.00332
3760 1 0.00332
4480 1 0.00332
4530 1 0.00332
4820 1 0.00332
4910 1 0.00332
4970 1 0.00333
5660 1 0.00332
6080 1 0.00333
6110 1 0.00333
6270 1 0.00332
7020 1 0.00333
7190 1 0.00332
10000 1 0.00333
10100 1 0.00333
10200 1 0.00333
10300 1 0.00333
11200 1 0.00333
12400 1 0.00333
12600 1 0.00333
13400 1 0.00333
13600 1 0.00333
14600 1 0.00333
16300 1 0.00333
16400 1 0.00333
17100 1 0.00333
17200 1 0.00333
17300 1 0.00333
17400 1 0.00333
17600 1 0.00333
18500 1 0.00333
19400 1 0.00333
20900 1 0.00333
23200 1 0.00333
23600 1 0.00333
24200 1 0.00333

CL70 ----> CL60

image

No. of shared pairs: :18

CL70 ----> CL331

image

No. of shared pairs: :14