Cluster no. 11

Cluster no. 11

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Cluster is part of supercluster: 1

Cluster characteristics:

size	8449
size_real	8449
ecount	1959639
supercluster	1
annotations_summary	0.01% organelle/mitochondria 0.01% Class_I/LINE:LINE-RT
pair_completeness	0.384401114206128
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0753935376967688
satellite_probability	1.69776486664788e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2740
S9	2760
S7	2960

comparative analysis - number of edges between species:

	S8	S9	S7
S8	199000	202000	224000
S9	202000	203000	226000
S7	224000	226000	252000

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	1.000	0.999
S9	1.000	0.998	1.000
S7	0.999	1.000	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00012

LINE LINE-RT LINE LINE-RT 1 0.00012

clusters with similarity:

Cluster	Number of similarity hits

32	45900
26	20200
52	3150
93	113
101	75
56	22
31	2
893	2
112	1
184	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

26	1340	0.369
32	1260	0.374
56	270	0.107
52	132	0.0451
93	102	0.0492
81	38	0.0158
49	37	0.0139
9	26	0.00656
72	26	0.0109
16	13	0.00335
101	11	0.00555
13	9	0.00217
20	8	0.00213
112	8	0.00414
4	7	0.00161
18	7	0.00245
24	7	0.00229
1	6	0.00131
22	6	0.00183
23	5	0.00177
21	4	0.00158
61	4	0.00168
63	4	0.00164
6	3	0.000682
12	3	0.00107
31	3	0.00117
36	3	0.00119
476	3	0.00159
2	2	0.00052
27	2	6e-04
29	2	0.000639
41	2	0.000703
43	2	0.000784
83	2	0.000913
893	2	0.00106
3110	2	0.00106
5920	2	0.00106
7280	2	0.00106
12700	2	0.00106
7	1	0.000366
8	1	0.000298
15	1	0.00034
53	1	0.000459
55	1	0.000467
58	1	0.000507
78	1	0.00048
79	1	0.000484
89	1	0.000512
90	1	0.000494
114	1	0.000515
126	1	0.000521
351	1	0.000529
455	1	0.000529
662	1	0.00053
702	1	0.000531
726	1	0.000531
788	1	0.000531
1840	1	0.000532
2050	1	0.000532
3180	1	0.000532
3680	1	0.000532
3810	1	0.000532
5270	1	0.000532
5390	1	0.000532
5630	1	0.000532
5910	1	0.000532
5960	1	0.000532
6410	1	0.000532
6550	1	0.000532
6710	1	0.000532
7100	1	0.000532
8970	1	0.000532
9380	1	0.000532
10600	1	0.000532
10700	1	0.000532
11900	1	0.000532
14300	1	0.000532
14400	1	0.000532
14900	1	0.000532
15200	1	0.000532
17100	1	0.000532
18600	1	0.000532
19100	1	0.000532
19100	1	0.000532
19800	1	0.000532
21800	1	0.000532
25700	1	0.000532

CL11 ----> CL26

No. of shared pairs: :1338

CL11 ----> CL32

No. of shared pairs: :1265

CL11 ----> CL56

No. of shared pairs: :270

CL11 ----> CL52

No. of shared pairs: :132

CL11 ----> CL93

No. of shared pairs: :102

CL11 ----> CL81

No. of shared pairs: :38

CL11 ----> CL49

No. of shared pairs: :37

CL11 ----> CL9

No. of shared pairs: :26

CL11 ----> CL72

No. of shared pairs: :26

CL11 ----> CL16

No. of shared pairs: :13

CL11 ----> CL101

No. of shared pairs: :11