Cluster no. 12

Cluster no. 12

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Cluster is part of supercluster: 2

Cluster characteristics:

size	8382
size_real	8382
ecount	294392
supercluster	2
annotations_summary	0.29% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-INT 0.01% organelle/plastid 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.01% Class_I/LINE:LINE-ENDO 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
pair_completeness	0.641919686581783
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000715819613457409
satellite_probability	4.28947468612038e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2750
S9	2920
S7	2710

comparative analysis - number of edges between species:

	S8	S9	S7
S8	31300	33700	31000
S9	33700	36000	33300
S7	31000	33300	31000

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	1.000	0.997
S9	1.000	0.999	0.998
S7	0.997	0.998	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00012

LINE LINE-ENDO LINE LINE-ENDO 1 0.00012

Ale Ty1-RT Ale Ty1-RT 1 0.00012

Tcn1 Ty3-CHDII Tcn1 Ty3-CHDII 1 0.00012

Tekay Ty3-GAG Tekay Ty3-GAG 24 0.00286

Athila Ty3-INT Athila Ty3-INT 1 0.00012

Reina Ty3-INT Reina Ty3-INT 1 0.00012

Selgy Ty3-INT Selgy Ty3-INT 1 0.00012

TatV Ty3-INT TatV Ty3-INT 1 0.00012

Tcn1 Ty3-INT Tcn1 Ty3-INT 1 0.00012

Tekay Ty3-INT Tekay Ty3-INT 6 0.00072

clusters with similarity:

Cluster	Number of similarity hits

14	3020
30	1910
17	1810
22	454
62	277
34	155
23	56
39	7
28	4
1	1
16	1
27	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

14	487	0.275
30	320	0.209
34	171	0.143
62	137	0.115
22	40	0.0172
1	28	0.00775
17	26	0.0146
28	20	0.014
2	11	0.00382
39	11	0.00639
23	10	0.00538
8	8	0.00335
21	8	0.00511
44	8	0.00648
13	7	0.0022
18	7	0.0037
19	7	0.0025
6	6	0.00175
54	6	0.00496
5	5	0.0014
24	5	0.00239
10	4	0.00227
15	4	0.00202
37	4	0.00262
45	4	0.00337
65	4	0.00342
66	4	0.00339
3	3	0.000764
7	3	0.0017
11	3	0.00107
16	3	0.00103
29	3	0.00139
40	3	0.00206
42	3	0.00242
52	3	0.00153
53	3	0.00247
58	3	0.00298
67	3	0.00271
75	3	0.00256
92	3	0.00298
4	2	0.000593
9	2	0.000666
20	2	0.000716
25	2	0.00151
26	2	0.000752
33	2	0.00152
36	2	0.00128
41	2	0.00106
48	2	0.00113
64	2	0.00161
74	2	0.0016
78	2	0.00179
27	1	0.000422
31	1	0.000624
35	1	0.000542
38	1	0.000564
43	1	0.000631
47	1	0.000905
50	1	0.000877
55	1	0.00085
60	1	0.00081
63	1	0.000676
68	1	0.000875
70	1	0.000824
71	1	0.000857
72	1	7e-04
73	1	0.000838
79	1	0.000906
80	1	0.000877
87	1	0.000951
89	1	0.00101
90	1	0.000945
91	1	0.000958
96	1	0.00107
100	1	0.00108
102	1	0.00101
105	1	0.00103
111	1	0.00103
113	1	0.00105
114	1	0.00103
119	1	0.00107
139	1	0.00108
159	1	0.00105
163	1	0.00108
165	1	0.00107
183	1	0.00106
187	1	0.00107
203	1	0.00107
214	1	0.00108
229	1	0.00107
392	1	0.00108
435	1	0.00109
493	1	0.00108
499	1	0.00109
1050	1	0.00109
1240	1	0.00109
1250	1	0.00109
1270	1	0.00109
1430	1	0.00109
1920	1	0.00109
1970	1	0.00109
2380	1	0.00109
3150	1	0.00109
4080	1	0.00109
4150	1	0.00109
4970	1	0.00109
5040	1	0.00109
5570	1	0.00109
5930	1	0.00109
6620	1	0.00109
6800	1	0.00109
7230	1	0.00109
7710	1	0.00109
8260	1	0.00109
9210	1	0.00109
12800	1	0.00109
12900	1	0.00109
13000	1	0.00109
13700	1	0.00109
14100	1	0.00109
15000	1	0.00109
15800	1	0.00109
19200	1	0.00109
19800	1	0.00109
20400	1	0.00109
22500	1	0.00109

CL12 ----> CL14

No. of shared pairs: :487

CL12 ----> CL30

No. of shared pairs: :320

CL12 ----> CL34

No. of shared pairs: :171

CL12 ----> CL62

No. of shared pairs: :137

CL12 ----> CL22

No. of shared pairs: :40

CL12 ----> CL1

No. of shared pairs: :28

CL12 ----> CL17

No. of shared pairs: :26

CL12 ----> CL28

No. of shared pairs: :20

CL12 ----> CL2

No. of shared pairs: :11

CL12 ----> CL39

No. of shared pairs: :11

CL12 ----> CL23

No. of shared pairs: :10