Cluster no. 129

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Cluster is part of supercluster: 74

Cluster characteristics:

size 173
size_real 173
ecount 550
supercluster 74
annotations_summary
pair_completeness 0.235714285714286
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00578034682080925
satellite_probability 1.0516263740795e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 64
S9 52
S7 57
comparative analysis - number of edges between species:
S8 S9 S7
S8 56.0 59.5 68.0
S9 59.5 53.0 59.5
S7 68.0 59.5 67.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.915 1.040 1.050
S9 1.040 0.985 0.978
S7 1.050 0.978 0.974

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
16 18

clusters connected through mates:

Cluster Number of shared
read pairs		 k
16 21 0.0102
79 15 0.0617
442 4 0.0645
1910 3 0.0531
2 2 0.000991
207 2 0.0288
26100 2 0.0367
3 1 0.000326
8 1 0.000655
10 1 0.00111
23 1 0.001
37 1 0.00151
45 1 0.00308
237 1 0.0146
387 1 0.0154
739 1 0.0168
1420 1 0.0179
2260 1 0.0182
3280 1 0.018
11700 1 0.0183
21800 1 0.0183
22500 1 0.0183
23500 1 0.0183

CL129 ----> CL16

image

No. of shared pairs: :21

CL129 ----> CL79

image

No. of shared pairs: :15