Cluster no. 97

Go back to cluster table

Cluster is part of supercluster: 43

Cluster characteristics:

size 485
size_real 485
ecount 2977
supercluster 43
annotations_summary 11.96% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.53968253968254
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00206185567010309
satellite_probability 1.65508917325132e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 159
S9 161
S7 165
comparative analysis - number of edges between species:
S8 S9 S7
S8 289 274 349
S9 274 305 356
S7 349 356 425
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.030 0.957 1.010
S9 0.957 1.040 1.000
S7 1.010 1.000 0.991

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 58 0.12

clusters with similarity:

Cluster Number of similarity hits
53 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
98 14 0.11
94 8 0.0792
285 6 0.0663
309 5 0.0592
13 3 0.00129
16 2 0.000962
2010 2 0.0268
7670 2 0.0272
9330 2 0.0272
20200 2 0.0272
19 1 0.000511
21 1 0.00138
28 1 0.00171
31 1 0.00131
53 1 0.00268
57 1 0.011
410 1 0.0123
1400 1 0.0132
2650 1 0.0133
2890 1 0.0136
6410 1 0.0135
6500 1 0.0135
6740 1 0.0135
12100 1 0.0136
18600 1 0.0136
21900 1 0.0136

CL97 ----> CL98

image

No. of shared pairs: :14