Cluster no. 48

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Cluster is part of supercluster: 1

Cluster characteristics:

size	2783
size_real	2783
ecount	326565
supercluster	1
annotations_summary	0.18% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.18% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.04% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
pair_completeness	0.24074899687918
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0104204096298958
satellite_probability	1.0516263740795e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	882
S9	972
S7	929

comparative analysis - number of edges between species:

	S8	S9	S7
S8	33800	36500	34900
S9	36500	39200	37500
S7	34900	37500	35600

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.998	1.000	1.000
S9	1.000	0.998	1.000
S7	1.000	1.000	0.996

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ivana Ty1-PROT Ivana Ty1-PROT 1 0.00036

TatV Ty3-INT TatV Ty3-INT 5 0.00180

Tekay Ty3-PROT Tekay Ty3-PROT 1 0.00036

Reina Ty3-RT Reina Ty3-RT 5 0.00180

clusters with similarity:

Cluster	Number of similarity hits

16	5920
27	2290
24	247
19	3
20	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

16	730	0.255
27	682	0.296
13	34	0.0109
24	34	0.0167
3	28	0.00725
20	11	0.00403
19	4	0.00146
1	3	0.000845
21	3	0.00199
23	3	0.00167
31	3	0.00195
2	2	0.00071
4	2	0.000604
5	2	0.000571
8	2	0.000861
12	2	0.00113
18	2	0.00109
22	2	0.000886
26	2	0.00077
126	2	0.00224
6	1	0.000296
29	1	0.000475
32	1	0.000424
38	1	0.000585
41	1	0.00055
49	1	0.00061
52	1	0.000526
53	1	0.000868
60	1	0.000854
61	1	0.000741
68	1	0.000925
72	1	0.000732
92	1	0.00106
1110	1	0.00117
3540	1	0.00117
3990	1	0.00117
5290	1	0.00117
6830	1	0.00117
9400	1	0.00117
19800	1	0.00117
19900	1	0.00117

CL48 ----> CL16

No. of shared pairs: :730

CL48 ----> CL27

No. of shared pairs: :682

CL48 ----> CL13

No. of shared pairs: :34

CL48 ----> CL24

No. of shared pairs: :34

CL48 ----> CL3

No. of shared pairs: :28

CL48 ----> CL20

No. of shared pairs: :11