Cluster no. 109

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Cluster is part of supercluster: 54

Cluster characteristics:

size 296
size_real 296
ecount 897
supercluster 54
annotations_summary 30.07% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
17.57% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
4.73% organelle/mitochondria
1.35% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.34% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.34% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
pair_completeness 0.761904761904762
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00337837837837838
satellite_probability 5.68788576307886e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 79
S9 93
S7 124
comparative analysis - number of edges between species:
S8 S9 S7
S8 51 61 117
S9 61 67 123
S7 117 123 177
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.872 0.952 1.100
S9 0.952 0.954 1.050
S7 1.100 1.050 0.913

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 14 0.0473
Tork Ty1-RH Tork Ty1-RH 52 0.1757
Ale Ty1-RT Ale Ty1-RT 4 0.0135
Ikeros Ty1-RT Ikeros Ty1-RT 1 0.0034
Ivana Ty1-RT Ivana Ty1-RT 1 0.0034
Tork Ty1-RT Tork Ty1-RT 89 0.3007

clusters connected through mates:

Cluster Number of shared
read pairs		 k
169 7 0.184
1 1 0.000368
23 1 0.00104
24 1 0.000834
29 1 0.000786
41 1 0.00101
63 1 0.00171
80 1 0.00406
128 1 0.016
4500 1 0.0465
5300 1 0.0465