Cluster no. 117

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Cluster is part of supercluster: 62

Cluster characteristics:

size 237
size_real 237
ecount 1650
supercluster 62
annotations_summary 100.00% organelle/plastid
pair_completeness 0.866141732283465
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00421940928270042
satellite_probability 6.1246173690846e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 87
S9 76
S7 74
comparative analysis - number of edges between species:
S8 S9 S7
S8 274 200 188
S9 200 157 156
S7 188 156 131
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.030 0.970 0.986
S9 0.970 0.984 1.060
S7 0.986 1.060 0.956

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 237 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
118 8 0.421
125 5 0.294
340 1 0.08