Cluster no. 164

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Cluster is part of supercluster: 108

Cluster characteristics:

size	97
size_real	97
ecount	365
supercluster	108
annotations_summary	35.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 6.19% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 3.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 3.09% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
pair_completeness	0.366197183098592
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0103092783505155
satellite_probability	1.14691457676211e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	26
S9	38
S7	33

comparative analysis - number of edges between species:

	S8	S9	S7
S8	26.0	40.0	30.5
S9	40.0	67.0	46.5
S7	30.5	46.5	38.0

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.020	0.986	1.000
S9	0.986	1.040	0.961
S7	1.000	0.961	1.050

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-GAG CRM Ty3-GAG 6 0.062

Galadriel Ty3-GAG Galadriel Ty3-GAG 3 0.031

Reina Ty3-GAG Reina Ty3-GAG 3 0.031

Tekay Ty3-GAG Tekay Ty3-GAG 34 0.351

clusters with similarity:

Cluster	Number of similarity hits

23	4
10	3
22	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

23	17	0.0176
10	13	0.0149
1150	2	0.0833
22	1	7e-04
61	1	0.00192
11400	1	0.0426

CL164 ----> CL23

No. of shared pairs: :17

CL164 ----> CL10

No. of shared pairs: :13