Cluster no. 154

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Cluster is part of supercluster: 98

Cluster characteristics:

size 108
size_real 108
ecount 674
supercluster 98
annotations_summary 0.93% Class_I/LINE:LINE-RT
pair_completeness 0.136842105263158
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00925925925925926
satellite_probability 6.94904844624655e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 38
S9 40
S7 30
comparative analysis - number of edges between species:
S8 S9 S7
S8 115 106 62
S9 106 76 55
S7 62 55 37
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.968 1.070 0.959
S9 1.070 0.912 1.020
S7 0.959 1.020 1.050

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 1 0.0093

clusters connected through mates:

Cluster Number of shared
read pairs		 k
817 6 0.126
939 3 0.0674
2700 3 0.069
21 2 0.00288
33 2 0.00448
4030 2 0.0465
6060 2 0.0471
15300 2 0.0476
1 1 0.000365
3 1 0.000328
4 1 4e-04
13 1 0.000434
18 1 0.000982
24 1 0.000819
28 1 0.00181
64 1 0.0027
356 1 0.0192
565 1 0.0225
813 1 0.0225
5360 1 0.0235
6080 1 0.0235
8100 1 0.0238
9880 1 0.0238
16300 1 0.0238
20600 1 0.0238
25800 1 0.0238