Cluster no. 175

Go back to cluster table

Cluster is part of supercluster: 119

Cluster characteristics:

size 84
size_real 84
ecount 222
supercluster 119
annotations_summary
pair_completeness 0.217391304347826
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0119047619047619
satellite_probability 9.91635870094047e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 27
S9 29
S7 28
comparative analysis - number of edges between species:
S8 S9 S7
S8 17 22.0 20.0
S9 22 22.0 32.5
S7 20 32.5 34.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.08 1.080 0.87
S9 1.08 0.835 1.09
S7 0.87 1.090 1.01

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
29 19 0.0149
18 8 0.00796
6340 2 0.0702
1 1 0.000367
13 1 0.000437
16 1 0.000492
22200 1 0.0357
24200 1 0.0357

CL175 ----> CL29

image

No. of shared pairs: :19