Cluster no. 100

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Cluster is part of supercluster: 46

Cluster characteristics:

size 432
size_real 432
ecount 6890
supercluster 46
annotations_summary 30.09% 5S_rDNA/5S_rDNA
0.23% Class_I/LINE:LINE-RT
pair_completeness 0.894736842105263
pbs_score 0.0
TR_score 0.4059776688453159
TR_monomer_length 557.0
loop_index 0.953703703703704
satellite_probability 0.741048130040456
consensus 
GAAATAAGGGAGAAAGCTAAATTTGCAATTAAAAAGAATCAAGAACGAAATGAAGTATTTGAATCCACAAATTCAAACAA
CGACGGTGAGAATGGCATACGGAAAGAATTGAAGGAAAGAAACTACTGTCAGCTTTTGAAATTCAACCAGACAACGTAGT
GAGAACGTTAAATTTGAAAATAAAAGGAAATGAAATTGTAAAGAAAATAAAAAAAGTGTTCAAGTTCTAATAAAGAAGTA
GAAATAAATAAAAAATGTTGAAATTTTAAACTGTAAGTTCGAACTGCGGCGGTGGTTGACAAAAAGGGAGGGGGTGCAAC
ACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTTCGGAGTTCTGATGGGATCC
GGTGCTTTAGTGCTGGTATGATCGCACCCGTCAGGAAGTGGATTGGCCAAGCACTAATGCAGTGGCTGTAGAGCGTAGAT
AAATGCCGCGGTTAACGGCAACAACGTTTGAAATTCTTAGAAATAACATTACATTTGACAAAATAAAAATAAAAATA

  

  

    TAREAN_annotation
    rDNA
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S8
    138
  

  

    S9
    148
  

  

    S7
    146
  

 


 
 comparative analysis - number of edges between species:



  

    
    S8
    S9
    S7
  

   

    S8
    638
    748
    726
  

  

    S9
    748
    909
    818
  

  

    S7
    726
    818
    759
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S8
    S9
    S7
  

   

    S8
    0.986
    0.986
    1.030
  

  

    S9
    0.986
    1.020
    0.989
  

  

    S7
    1.030
    0.989
    0.986
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
5S_rDNA 

5S_rDNA



130

0.3009


 

 
LINE LINE-RT

LINE

LINE-RT

  1

0.0023


 
	


 

 


 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    12
    1
    0.00108
  

  

    22
    1
    0.000705
  

  

    23
    1
    0.00105
  

  

    49
    1
    0.00125
  

  

    54
    1
    0.00326
  

  

    5060
    1
    0.0741
  

  

    14600
    1
    0.0769