Cluster no. 167

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Cluster is part of supercluster: 111

Cluster characteristics:

size 92
size_real 92
ecount 344
supercluster 111
annotations_summary 100.00% organelle/plastid
pair_completeness 0.803921568627451
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0108695652173913
satellite_probability 3.7950125041552e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 27
S9 34
S7 31
comparative analysis - number of edges between species:
S8 S9 S7
S8 33.0 39 31.5
S9 39.0 38 48.0
S7 31.5 48 36.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.060 1.040 0.906
S9 1.040 0.837 1.140
S7 0.906 1.140 0.928

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 92 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1530 5 0.588
135 2 0.129
1330 1 0.111