Cluster no. 115

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Cluster is part of supercluster: 60

Cluster characteristics:

size	245
size_real	245
ecount	682
supercluster	60
annotations_summary	46.94% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 11.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT 5.71% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 3.27% Class_I/LTR/Ty1_copia/Tork:Ty1-INT 0.82% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.82% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness	0.49390243902439
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00408163265306122
satellite_probability	2.89707838193454e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	90
S9	84
S7	71

comparative analysis - number of edges between species:

	S8	S9	S7
S8	89.0	82.5	67.0
S9	82.5	83.0	75.5
S7	67.0	75.5	60.0

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.070	0.979	0.946
S9	0.979	0.975	1.060
S7	0.946	1.060	0.998

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ivana Ty1-INT Ivana Ty1-INT 2 0.0082

SIRE Ty1-INT SIRE Ty1-INT 115 0.4694

Tork Ty1-INT Tork Ty1-INT 8 0.0327

SIRE Ty1-PROT SIRE Ty1-PROT 14 0.0571

SIRE Ty1-RT SIRE Ty1-RT 27 0.1102

Reina Ty3-INT Reina Ty3-INT 2 0.0082

clusters connected through mates:

Cluster	Number of shared read pairs	k

170	11	0.175
7390	3	0.0698
1	2	0.00073
18	2	0.00196
24	2	0.00164
883	2	0.044
2430	2	0.0465
3600	2	0.046
4	1	4e-04
16	1	0.000488
23	1	0.00102
29	1	0.000773
64	1	0.0027
73	1	0.00311
3170	1	0.0235
4770	1	0.0233
5600	1	0.0238
6170	1	0.0233
22700	1	0.0235

CL115 ----> CL170

No. of shared pairs: :11