Cluster no. 122

Go back to cluster table

Cluster is part of supercluster: 67

Cluster characteristics:

size 198
size_real 198
ecount 1060
supercluster 67
annotations_summary 33.33% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
17.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
pair_completeness 0.752212389380531
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00505050505050505
satellite_probability 7.54576282516466e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 71
S9 62
S7 65
comparative analysis - number of edges between species:
S8 S9 S7
S8 129 114 110
S9 114 109 116
S7 110 116 141
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.090 1.010 0.902
S9 1.010 1.010 0.987
S7 0.902 0.987 1.110

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-PROT Athila Ty3-PROT 34 0.17
Athila Ty3-RT Athila Ty3-RT 66 0.33

clusters connected through mates:

Cluster Number of shared
read pairs		 k
103 11 0.234
508 6 0.286
22200 2 0.133
1 1 0.000369
31 1 0.00142
53 1 0.00317
155 1 0.0392
23700 1 0.0667

CL122 ----> CL103

image

No. of shared pairs: :11