Cluster no. 56
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Cluster is part of supercluster: 1
Cluster characteristics:
| size |
2486 |
| size_real |
2486 |
| ecount |
785419 |
| supercluster |
1 |
| annotations_summary |
|
| pair_completeness |
0.316040232927475 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.84875301689461 |
| satellite_probability |
0.000384710928621226 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
883 |
| S9 |
838 |
| S7 |
765 |
comparative analysis - number of edges between species:
|
S8 |
S9 |
S7 |
| S8 |
90800 |
90200 |
86000 |
| S9 |
90200 |
90200 |
85400 |
| S7 |
86000 |
85400 |
81100 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S9 |
S7 |
| S8 |
1.000 |
0.998 |
1.000 |
| S9 |
0.998 |
1.000 |
0.999 |
| S7 |
1.000 |
0.999 |
0.999 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 26 |
16200 |
| 81 |
11600 |
| 11 |
22 |
| 9 |
3 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 81 |
395 |
0.335 |
| 26 |
322 |
0.135 |
| 11 |
270 |
0.107 |
| 9 |
215 |
0.0787 |
| 52 |
24 |
0.0142 |
| 32 |
4 |
0.00186 |
| 93 |
4 |
0.00475 |
| 4 |
2 |
0.000644 |
| 13 |
2 |
0.000688 |
| 18 |
2 |
0.00123 |
| 1 |
1 |
0.000299 |
| 3 |
1 |
0.000273 |
| 5 |
1 |
0.000303 |
| 6 |
1 |
0.000316 |
| 10 |
1 |
0.000668 |
| 15 |
1 |
0.000586 |
| 16 |
1 |
0.000377 |
| 17 |
1 |
0.000659 |
| 20 |
1 |
0.000396 |
| 31 |
1 |
0.000749 |
| 43 |
1 |
0.000759 |
| 49 |
1 |
0.000697 |
| 50 |
1 |
0.00115 |
| 66 |
1 |
0.0011 |
| 75 |
1 |
0.00111 |
| 79 |
1 |
0.0012 |
| 103 |
1 |
0.00147 |
| 1720 |
1 |
0.00154 |
| 2860 |
1 |
0.00154 |
| 5270 |
1 |
0.00154 |
| 19000 |
1 |
0.00155 |
| 19100 |
1 |
0.00155 |
| 24900 |
1 |
0.00155 |
|
CL56 ----> CL81
No. of shared pairs: :395
CL56 ----> CL26
No. of shared pairs: :322
CL56 ----> CL11
No. of shared pairs: :270
CL56 ----> CL9
No. of shared pairs: :215
CL56 ----> CL52
No. of shared pairs: :24