Cluster no. 112

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Cluster is part of supercluster: 57

Cluster characteristics:

size 256
size_real 256
ecount 728
supercluster 57
annotations_summary 0.39% organelle/plastid
0.39% Class_II/Subclass_1/TIR/hAT:hAT-TPase
pair_completeness 0.406593406593407
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.1875
satellite_probability 1.72559681289872e-12
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 82
S9 82
S7 92
comparative analysis - number of edges between species:
S8 S9 S7
S8 85.0 70.5 68.5
S9 70.5 82.0 91.0
S7 68.5 91.0 101.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.230 0.941 0.855
S9 0.941 1.010 1.040
S7 0.855 1.040 1.080

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0039
hAT hAT-TPase hAT hAT-TPase 1 0.0039

clusters with similarity:

Cluster Number of similarity hits
11 1
41 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
41 10 0.00981
11 8 0.00414
26 7 0.00389
166 5 0.0637
341 5 0.0806
846 3 0.0517
1220 3 0.0522
3150 3 0.0536
146 2 0.0258
9110 2 0.0364
1 1 0.000363
16 1 0.000485
22 1 0.000684
192 1 0.0161
758 1 0.0172
975 1 0.0168
1750 1 0.0179
1840 1 0.0179
1860 1 0.0175
2600 1 0.018
5480 1 0.0183
6150 1 0.0183
7000 1 0.018
11700 1 0.0182
15500 1 0.0182
17500 1 0.0182
20800 1 0.0182

CL112 ----> CL41

image

No. of shared pairs: :10