Cluster no. 9

Cluster no. 9

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size	8675
size_real	8675
ecount	3781831
supercluster	1
annotations_summary	0.08% organelle/plastid 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT 0.01% organelle/mitochondria 0.01% Class_I/LINE:LINE-RT
pair_completeness	0.350194552529183
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0318155619596542
satellite_probability	5.21895003093699e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2970
S9	2880
S7	2820

comparative analysis - number of edges between species:

	S8	S9	S7
S8	431000	430000	415000
S9	430000	429000	415000
S7	415000	415000	401000

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1	1.000	1
S9	1	0.999	1
S7	1	1.000	1

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00012

plastid plastid 7 0.00081

LINE LINE-RT LINE LINE-RT 1 0.00012

Tcn1 Ty3-RT Tcn1 Ty3-RT 2 0.00023

clusters with similarity:

Cluster	Number of similarity hits

20	88000
81	56500
26	21400
19	64
91	63
41	10
56	3
1	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

20	1640	0.414
26	1030	0.269
81	497	0.19
56	215	0.0787
19	204	0.0513
41	61	0.02
11	26	0.00656
91	23	0.0104
52	19	0.00606
16	14	0.00342
13	11	0.00253
24	9	0.00275
6	8	0.00174
3	5	0.000981
61	5	0.00193
1	4	0.000836
2	4	0.000987
5	4	0.000844
29	4	0.0012
8	3	0.000843
25	3	0.0012
27	3	0.000847
63	3	0.00113
4	2	0.00044
12	2	0.000666
18	2	0.000653
23	2	0.00066
31	2	0.00072
35	2	0.000662
37	2	0.000741
38	2	0.000679
70	2	0.000838
5020	2	0.000957
7290	2	0.000957
24100	2	0.000958
7	1	0.00034
15	1	0.000318
17	1	0.000338
21	1	0.000365
22	1	0.000286
28	1	0.000385
30	1	0.00037
32	1	0.000278
44	1	0.000415
49	1	0.000348
50	1	0.000432
53	1	0.000419
55	1	0.000425
59	1	0.000352
62	1	0.000423
69	1	0.000438
79	1	0.000439
80	1	0.000432
84	1	0.000431
93	1	0.000438
103	1	0.000472
106	1	0.000476
119	1	0.000473
123	1	0.00047
130	1	0.000471
139	1	0.000476
150	1	0.000469
252	1	0.000476
298	1	0.000476
393	1	0.000478
1110	1	0.000478
1180	1	0.000478
2910	1	0.000479
3810	1	0.000479
4600	1	0.000479
5780	1	0.000479
6790	1	0.000479
15400	1	0.000479
16400	1	0.000479
17300	1	0.000479
18000	1	0.000479
19000	1	0.000479
20700	1	0.000479
21300	1	0.000479
24300	1	0.000479
26100	1	0.000479

CL9 ----> CL20

No. of shared pairs: :1643

CL9 ----> CL26

No. of shared pairs: :1032

CL9 ----> CL81

No. of shared pairs: :497

CL9 ----> CL56

No. of shared pairs: :215

CL9 ----> CL19

No. of shared pairs: :204

CL9 ----> CL41

No. of shared pairs: :61

CL9 ----> CL11

No. of shared pairs: :26

CL9 ----> CL91

No. of shared pairs: :23

CL9 ----> CL52

No. of shared pairs: :19

CL9 ----> CL16

No. of shared pairs: :14

CL9 ----> CL13

No. of shared pairs: :11