Cluster no. 134

Go back to cluster table

Cluster is part of supercluster: 79

Cluster characteristics:

size 150
size_real 150
ecount 507
supercluster 79
annotations_summary
pair_completeness 0.181102362204724
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00666666666666667
satellite_probability 8.5036589366246e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 54
S9 36
S7 60
comparative analysis - number of edges between species:
S8 S9 S7
S8 66.0 52.5 77.0
S9 52.5 26.0 48.5
S7 77.0 48.5 59.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.876 1.070 1.080
S9 1.070 0.817 1.050
S7 1.080 1.050 0.879

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
4 39

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4 39 0.0155
1440 5 0.0917
241 2 0.0305
593 2 0.0339
1390 2 0.0357
2380 2 0.0367
1 1 0.000364
24 1 0.000812
29 1 0.000767
63 1 0.00162
126 1 0.0106
1350 1 0.0182
6240 1 0.0187
7510 1 0.0189
10200 1 0.0189
10700 1 0.0189
13300 1 0.0189
14400 1 0.0189
15600 1 0.0189
22300 1 0.0189
24200 1 0.0189
25900 1 0.0189

CL134 ----> CL4

image

No. of shared pairs: :39