Cluster no. 75

Cluster no. 75

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Cluster is part of supercluster: 2

Cluster characteristics:

size	1463
size_real	1463
ecount	9992
supercluster	2
annotations_summary	0.07% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH 0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
pair_completeness	0.479271991911021
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00478468899521531
satellite_probability	3.21043016719236e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	512
S9	498
S7	453

comparative analysis - number of edges between species:

	S8	S9	S7
S8	1050	1120	1000
S9	1120	1270	1170
S7	1000	1170	1080

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.040	0.991	0.971
S9	0.991	1.000	1.010
S7	0.971	1.010	1.020

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

SIRE Ty1-RH SIRE Ty1-RH 1 0.00068

Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00068

clusters with similarity:

Cluster	Number of similarity hits

7	201
1	43
37	16
54	4
71	4
15	1
28	1
39	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

7	171	0.154
1	147	0.0497
37	35	0.0403
15	19	0.0144
71	12	0.0235
3530	4	0.0154
12	3	0.00256
16	3	0.00132
28	3	0.0039
50	2	0.00413
54	2	0.00362
2	1	0.00045
3	1	0.000306
5	1	0.000344
13	1	0.000397
19	1	0.000467
22	1	0.000601
24	1	0.000696
26	1	0.000499
36	1	0.00111
39	1	0.000938
47	1	0.00223
53	1	0.00179
56	1	0.00111
78	1	0.00217
87	1	0.00253
126	1	0.00334
343	1	0.00377
898	1	0.00382
2020	1	0.00384
2340	1	0.00385
4170	1	0.00385
4590	1	0.00386
4650	1	0.00386
5400	1	0.00386
6020	1	0.00386
6370	1	0.00386
10700	1	0.00387
12900	1	0.00387
25600	1	0.00387

CL75 ----> CL7

No. of shared pairs: :171

CL75 ----> CL1

No. of shared pairs: :147

CL75 ----> CL37

No. of shared pairs: :35

CL75 ----> CL15

No. of shared pairs: :19

CL75 ----> CL71

No. of shared pairs: :12