Cluster no. 35

Cluster no. 35

Go back to cluster table

Cluster is part of supercluster: 3

Cluster characteristics:

size	5713
size_real	5713
ecount	93641
supercluster	3
annotations_summary	0.02% Class_I/LINE:LINE-ENDO 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.02% organelle/plastid 0.02% Class_I/LTR/Ty1_copia/Alesia:Ty1-GAG 0.02% Class_II/Subclass_1/TIR/PIF_Harbinger:Harbinger-TPase
pair_completeness	0.50818373812038
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.404691055487485
satellite_probability	6.11456497571856e-07
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1910
S9	1920
S7	1880

comparative analysis - number of edges between species:

	S8	S9	S7
S8	11600	10800	10400
S9	10800	10300	9750
S7	10400	9750	9850

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.010	0.998	0.994
S9	0.998	1.020	0.986
S7	0.994	0.986	1.020

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00018

PIF_Harbinger Harbinger-TPase PIF_Harbinger Harbinger-TPase 1 0.00018

LINE LINE-ENDO LINE LINE-ENDO 1 0.00018

Alesia Ty1-GAG Alesia Ty1-GAG 1 0.00018

Ale Ty1-RT Ale Ty1-RT 1 0.00018

clusters with similarity:

Cluster	Number of similarity hits

8	1110
38	655
40	24
2	20
74	17
84	8
52	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

8	567	0.236
38	555	0.31
2	39	0.0135
40	26	0.0176
74	24	0.0189
206	16	0.0167
84	14	0.012
16	8	0.00272
13	6	0.00188
29	6	0.00275
52	6	0.00303
1490	6	0.00642
4	5	0.00147
970	5	0.00534
1830	5	0.00535
1	4	0.0011
833	4	0.00427
2940	4	0.00428
3380	4	0.00428
18	3	0.00157
1380	3	0.00321
1830	3	0.00321
2600	3	0.00321
4780	3	0.00322
7400	3	0.00322
9	2	0.000662
22	2	0.000855
24	2	0.000947
92	2	0.00195
1630	2	0.00214
1800	2	0.00214
2950	2	0.00214
3580	2	0.00214
3650	2	0.00214
5130	2	0.00214
5610	2	0.00214
5800	2	0.00214
6120	2	0.00214
6240	2	0.00214
6390	2	0.00214
6610	2	0.00214
6630	2	0.00214
6950	2	0.00214
10700	2	0.00214
11600	2	0.00214
19100	2	0.00214
20900	2	0.00214
21100	2	0.00214
24400	2	0.00214
25800	2	0.00214
5	1	0.000279
12	1	0.000542
20	1	0.000356
23	1	0.000533
27	1	0.000419
30	1	0.000645
43	1	0.000624
46	1	0.000754
50	1	0.000864
60	1	0.000799
61	1	7e-04
62	1	0.000827
63	1	0.000668
114	1	0.00101
518	1	0.00107
1660	1	0.00107
1700	1	0.00107
2410	1	0.00107
2770	1	0.00107
2830	1	0.00107
2870	1	0.00107
3050	1	0.00107
3080	1	0.00107
3600	1	0.00107
3820	1	0.00107
3850	1	0.00107
4210	1	0.00107
5810	1	0.00107
5890	1	0.00107
6540	1	0.00107
6850	1	0.00107
6930	1	0.00107
7060	1	0.00107
7150	1	0.00107
8090	1	0.00107
8330	1	0.00107
8990	1	0.00107
9240	1	0.00107
9720	1	0.00107
9790	1	0.00107
10100	1	0.00107
10700	1	0.00107
12300	1	0.00107
13600	1	0.00107
14000	1	0.00107
15600	1	0.00107
16300	1	0.00107
16400	1	0.00107
17600	1	0.00107
18200	1	0.00107
18600	1	0.00107
22000	1	0.00107
23100	1	0.00107

CL35 ----> CL8

No. of shared pairs: :567

CL35 ----> CL38

No. of shared pairs: :555

CL35 ----> CL2

No. of shared pairs: :39

CL35 ----> CL40

No. of shared pairs: :26

CL35 ----> CL74

No. of shared pairs: :24

CL35 ----> CL206

No. of shared pairs: :16

CL35 ----> CL84

No. of shared pairs: :14